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BioLiP
>protein
VYSEKELGIPQLNTVTPVGVTKPKGKKKGKVFVDDRESMNTILAMVEAEKQGQIESKIMRARQLEEIREARRIEAEKKEA
ERKALLEN

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i9t:CX 88 88 1.0000 1.0000 1.0000 3.02e-58 8i9v:CX, 8i9w:CX, 8i9x:CX, 8i9y:CX, 8i9z:CX, 8ia0:CX
2 8v87:7 134 79 0.3864 0.2537 0.4304 2.97e-08 7nac:7, 7r7a:7, 7r7c:7
3 7r6k:7 109 72 0.3295 0.2661 0.4028 4.16e-04
4 8fhd:A 1294 57 0.2500 0.0170 0.3860 0.32
5 8hkb:A 302 77 0.2273 0.0662 0.2597 0.50 8hka:A
6 3u0k:A 397 31 0.1818 0.0403 0.5161 2.1
7 6dbi:C 622 31 0.1364 0.0193 0.3871 4.4 6dbi:A, 6dbj:A, 6dbj:C, 6dbl:A, 6dbl:C, 6dbo:A, 6dbo:C, 6dbq:A, 6dbq:C, 6dbr:A, 6dbr:C, 6dbt:A, 6dbt:C, 6dbu:A, 6dbu:C, 6dbv:A, 6dbv:C, 6dbw:A, 6dbw:C, 6dbx:A, 6dbx:C, 3jbw:A, 3jbw:C, 3jbx:A, 3jbx:C, 3jby:A, 3jby:C
8 6opp:A 389 50 0.1477 0.0334 0.2600 5.9 6opo:A, 6opo:D, 6opo:J, 6opp:D, 6opp:J, 6opq:A, 6opq:D, 6opq:E, 5vn3:G, 5vn3:I, 5vn3:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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