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BioLiP
>protein
VTYFSSRKGKRKTVKAVIYRFLRLHSGLWLRRKAGYKKKLWKKTAARKRRLREFVFCNKTQSKLLDKMTTSFWKRRNWYA
DDPYQKYQDRTNLKV

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a5f:33 95 95 0.9053 0.9053 0.9053 1.12e-58 7a5g:33, 7a5h:3, 7a5i:33, 7a5j:3, 7a5k:33, 5aj4:B8, 8any:3, 4ce4:8, 6gaw:B8, 6gb2:B8, 6i9r:3, 3j7y:3, 3j9m:3, 8k2a:Li, 8k2b:Li, 7l08:3, 7l20:3, 7nqh:B8, 7nql:B8, 7nsh:B8, 7nsi:B8, 7nsj:B8, 6nu2:3, 6nu3:3, 7o9k:3, 7o9m:3, 7odr:3, 7ods:3, 7odt:3, 7of0:3, 7of2:3, 7of3:3, 7of4:3, 7of5:3, 7of6:3, 7of7:3, 7og4:3, 7oi7:3, 7oi8:3, 7oi9:3, 7oia:3, 7oib:3, 7oic:3, 7oid:3, 7oie:3, 8oin:BK, 8oiq:BK, 8oir:BK, 8oit:BK, 5ool:3, 5oom:3, 7pd3:3, 8pk0:3, 7po4:3, 7qh6:3, 7qh7:3, 7qi4:3, 7qi5:3, 7qi6:3, 8qsj:3, 8qu1:3, 8qu5:3, 4v19:8, 6vlz:3, 6vmi:3, 8xt0:Li, 8xt1:Li, 8xt2:Li, 8xt3:Li, 6ydp:B8, 6ydw:B8, 6zm5:3, 6zm6:3, 6zs9:3, 6zsa:3, 6zsb:3, 6zsc:3, 6zsd:3, 6zse:3, 6zsg:3
2 8cja:A 669 52 0.1579 0.0224 0.2885 0.51 8cjb:A, 8cjc:A, 8cmw:A, 7zkj:A, 7zkk:A, 7zkv:A
3 6eri:Ad 72 51 0.2000 0.2639 0.3725 0.63 5h1s:e, 5mlc:5, 5mmi:4, 5mmm:4, 4v61:B5, 5x8p:4, 5x8t:4
4 8rdj:F 660 27 0.1053 0.0152 0.3704 1.0
5 8ras:F 568 27 0.1053 0.0176 0.3704 1.5
6 7f0d:3 62 54 0.2105 0.3226 0.3704 2.3 7kgb:3, 7msc:3, 7msh:3, 7msm:3, 7msz:3, 7mt2:3, 7mt3:3, 7mt7:3, 7sfr:3, 5v7q:3, 5v93:3
7 7pcf:F 341 67 0.2000 0.0557 0.2836 3.3 7pch:E, 7pch:F, 3rtl:A, 3rtl:B, 3rtl:C, 3rtl:D, 3rur:A, 3rur:B, 3rur:C, 3rur:D, 5vmm:F, 5vmm:E
8 6uo8:A 689 56 0.1895 0.0261 0.3214 5.0 7c7q:A, 7c7s:A, 7ca3:A, 7cum:A, 7eb2:C, 4mqf:A, 4mr7:A, 4mr8:A, 4mr9:A, 4mrm:A, 4ms1:A, 4ms3:A, 4ms4:A, 6uo9:A, 6w2x:A, 6w2y:A, 6w2y:B, 6wiv:A
9 5mq6:A 636 32 0.1263 0.0189 0.3750 8.2
10 8tdi:G 386 48 0.1474 0.0363 0.2917 9.5 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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