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BioLiP
>protein
VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYK
FVSYPE

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dux:C 86 86 1.0000 1.0000 1.0000 2.96e-60 1dux:F
2 1hbx:G 112 71 0.6744 0.5179 0.8169 1.81e-37 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
3 4uuv:A 96 86 0.6047 0.5417 0.6047 1.00e-35 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
4 6vgd:A 98 81 0.5814 0.5102 0.6173 8.13e-33 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
5 4bqa:A 132 83 0.6163 0.4015 0.6386 8.55e-33
6 6da1:B 138 83 0.6047 0.3768 0.6265 4.89e-32 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
7 3zp5:A 92 81 0.5814 0.5435 0.6173 6.98e-32
8 1awc:A 110 83 0.5814 0.4545 0.6024 7.46e-29
9 7jsa:J 88 81 0.5349 0.5227 0.5679 3.83e-28 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
10 8bzm:H 88 86 0.5116 0.5000 0.5116 6.26e-27 8bzm:B
11 1yo5:C 88 84 0.5116 0.5000 0.5238 1.15e-24
12 8e67:F 97 84 0.4535 0.4021 0.4643 3.89e-24 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
13 3jtg:A 95 80 0.4186 0.3789 0.4500 2.61e-20
14 8eo4:F 95 84 0.3721 0.3368 0.3810 5.73e-10 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 4zah:A 370 55 0.1744 0.0405 0.2727 0.35 4zah:B, 4zah:C, 4zah:D, 4zah:E, 4zah:F, 4zah:G, 4zah:H
16 3fb4:A 215 60 0.1744 0.0698 0.2500 0.99
17 7uzf:C 602 70 0.2791 0.0399 0.3429 2.9 9b8p:A, 9brd:A, 7khr:C, 7u4t:B, 7u8p:C, 7u8q:B, 7u8r:A, 7unf:M, 7uzg:C, 7uzh:B, 7uzi:B, 7uzj:C, 7uzk:C, 6vq6:C, 6vq7:B, 6vq8:A, 6vq9:C, 6vqa:B, 6vqb:A, 6wlz:C, 6wm2:C, 6wm3:B, 6wm4:A, 6xbw:C, 6xby:A
18 6bjv:A 148 46 0.2093 0.1216 0.3913 4.4 6bjg:A, 6bjg:B, 6bjh:A, 6bjh:B, 6bjv:B, 4j39:A, 4j5v:A, 4jgn:A, 4jk0:D, 4jnx:A, 4jnx:D, 4knq:A, 4kq0:A, 4kq0:D, 4ktg:A, 1r9f:A, 1rpu:A, 1rpu:B
19 8i70:A 658 28 0.1279 0.0167 0.3929 5.5 8a30:A, 8a7s:A, 8a8t:A, 8aer:A, 8j2a:A, 8j2b:A, 8j2d:A, 8j2e:A
20 7tmm:A 593 69 0.2326 0.0337 0.2899 6.7 7tmo:A, 7tmo:E, 7tmp:A, 7tmq:A, 7tmr:E, 7tms:E, 7tmt:E
21 2eih:A 343 94 0.2674 0.0671 0.2447 7.0 2eih:B
22 6wug:A 312 44 0.1512 0.0417 0.2955 8.4
23 6vft:C 420 20 0.1279 0.0262 0.5500 8.9 6vft:A, 6vft:B, 6vft:D
24 1iy8:A 258 21 0.0930 0.0310 0.3810 9.5 1iy8:B, 1iy8:C, 1iy8:D, 1iy8:E, 1iy8:F, 1iy8:G, 1iy8:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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