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BioLiP
>protein
VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINC

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2j9u:B 47 47 1.0000 1.0000 1.0000 1.21e-29 2j9u:D
2 7mo3:B 38 16 0.1702 0.2105 0.5000 1.5 7mo3:D, 7mo4:B, 7mo4:D
3 3a9y:A 403 13 0.1277 0.0149 0.4615 1.9 3a9x:A, 3a9x:B, 3a9y:B, 3a9z:A, 3a9z:B
4 2y6e:B 339 29 0.2553 0.0354 0.4138 1.9 2y6e:A, 2y6e:C, 2y6e:E, 2y6e:F
5 5jne:A 351 28 0.2128 0.0285 0.3571 3.1 3i2d:A, 5jne:E
6 6zga:A 751 19 0.1702 0.0107 0.4211 3.1 4bzi:A, 4bzi:D, 4bzi:G, 6gni:A, 1m2o:A, 1m2o:C, 2qtv:A, 6zga:E
7 1m2v:A 705 19 0.1702 0.0113 0.4211 3.1
8 6wq6:A 547 26 0.2128 0.0183 0.3846 3.3 6wqi:A, 6wqi:B, 6wqs:A, 6wqt:A
9 8e9h:G 782 48 0.3830 0.0230 0.3750 3.5 8e9g:G, 8e9i:G
10 6bd4:A 379 31 0.2340 0.0290 0.3548 6.8
11 8q3k:B 1020 20 0.1915 0.0088 0.4500 7.5
12 8q3b:B 1104 20 0.1915 0.0082 0.4500 7.5
13 6pk3:B 400 22 0.2128 0.0250 0.4545 9.6 6pk1:A, 6pk1:B, 6pk3:A
14 8a22:Xe 483 27 0.2340 0.0228 0.4074 9.7 8apn:Xe, 8apo:Xe
15 2wbt:A 125 35 0.2340 0.0880 0.3143 9.9 2wbt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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