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BioLiP
>protein
VSKSEIKRDAEELKRLGAEIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALDKLKN
RHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKEGNKPPKSARQIFQYLRELAENEG

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bl5:8 157 157 1.0000 1.0000 1.0000 4.69e-109
2 3o26:A 294 42 0.1146 0.0612 0.4286 0.71
3 2vn0:A 464 59 0.1083 0.0366 0.2881 1.6 2nnh:A, 2nnh:B, 2nni:A, 2nnj:A, 1pq2:A, 1pq2:B
4 6ca4:C 229 74 0.1338 0.0917 0.2838 1.6
5 5ee3:B 364 77 0.1529 0.0659 0.3117 3.4 5ee3:A, 5ee9:A
6 6uke:X 258 65 0.1210 0.0736 0.2923 5.1 6ukf:X, 6ukg:X, 6ukh:X, 6uki:X, 6uki:Y
7 8sp4:A 859 55 0.0955 0.0175 0.2727 7.2 8spg:A
8 7xpi:A 363 67 0.1146 0.0496 0.2687 8.2 7ytl:A
9 3kzl:A 266 73 0.1210 0.0714 0.2603 8.7 3ijw:A, 3ijw:B, 3kzl:D, 3kzl:C, 3kzl:B, 3n0m:A, 3n0m:B, 3n0s:A, 3n0s:D, 3n0s:C, 3n0s:B, 3slb:A, 3slb:D, 3slb:C, 3slb:B, 3slf:A, 3slf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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