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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDL
LDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGN
DAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRI
LYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRADRVFGVGCVHDGIWFAEG

The query sequence (length=291) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wqm:A 294 293 0.9897 0.9796 0.9829 0.0 4cmx:A, 4cmx:B, 4kt8:A, 3wqk:A, 3wql:A, 3wql:B, 3wql:C, 3wql:D, 3wqn:A
2 5izo:B 320 70 0.0859 0.0781 0.3571 0.030 5ipp:A, 5ipp:C, 5iuf:A, 5iuf:B, 5izo:A, 5izo:C, 5izo:D
3 3egd:B 731 42 0.0550 0.0219 0.3810 0.26 3egx:B, 8hr0:B, 2nup:B, 2nut:B, 5vne:B, 5vnf:B, 5vng:B, 5vnh:B, 5vni:B, 5vnj:B, 5vnk:B, 5vnl:B, 5vnm:B, 5vnn:B, 5vno:B
4 4rh7:A 3005 93 0.0893 0.0087 0.2796 0.36
5 6sc2:B 3930 93 0.0893 0.0066 0.2796 0.39 6rla:A, 6rla:B, 6sc2:A
6 1syo:A 422 56 0.0584 0.0403 0.3036 0.86 1syo:B, 1sz0:A, 1sz0:B
7 3i5t:A 444 64 0.0653 0.0428 0.2969 0.90 3i5t:B
8 5kr6:B 460 116 0.1031 0.0652 0.2586 1.3 5kr6:A
9 3p4h:A 118 46 0.0550 0.1356 0.3478 1.4 3ta5:A, 3ta7:A
10 3gju:A 458 98 0.0859 0.0546 0.2551 1.9
11 3eh1:A 737 45 0.0515 0.0204 0.3333 2.6
12 7r3b:C 371 99 0.0790 0.0620 0.2323 3.5 7r3b:A, 7r3b:B, 7r3b:D, 7r3b:E, 7r3b:F, 7r3b:G, 7r3b:H
13 5kqu:C 459 115 0.0962 0.0610 0.2435 5.5 5kqt:A, 5kqu:A, 5kqu:D, 5kqu:B, 5kqu:E, 5kqu:F
14 3nzq:A 628 50 0.0584 0.0271 0.3400 8.9 3nzq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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