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BioLiP
>protein
VRLPGLAAMRQGTRLFTPEQGEDLREALRRRRGSFQTTCEVTSETTFAAARRLREKASALAALNFASAKNPGGGFQAQEE
DLCRGSGLYFSLTSPQAEPYYAVNRQSHSALYTDHLIYSPQVPIFRDDAGQLLPAPVPVNIITAPAPNAGAVAQSRPEQL
PQVLPTLRERARRVLGVAAWMEQTHLVLGAWGCGVFRNDPAGVARTFRELLEGEAQGAFEHVTFAVLDNHPQHPTLGAFR
RELESLCL

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zdb:A 253 252 1.0000 0.9802 0.9841 0.0 5zdb:B, 5zdc:C, 5zdc:F, 5zdc:H, 5zdc:J, 5zdc:L, 5zdc:D, 5zdd:A, 5zde:C, 5zdf:A, 5zdg:C
2 3sig:A 265 241 0.4839 0.4528 0.4979 1.41e-57 3sii:A
3 3pgs:A 427 97 0.0968 0.0562 0.2474 0.32 3pf1:A, 3pf1:B, 3pgs:B, 3pgu:A, 1t16:A, 1t16:B
4 3pgr:A 376 97 0.0968 0.0638 0.2474 0.33 2r8a:A, 2r8a:B
5 8xku:A 730 42 0.0645 0.0219 0.3810 1.8 8xkv:A
6 7ylq:A 480 44 0.0645 0.0333 0.3636 3.7 7ylq:B
7 6da0:A 378 28 0.0484 0.0317 0.4286 4.9
8 2gbw:A 449 51 0.0685 0.0379 0.3333 7.2 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
9 1o4s:B 384 46 0.0766 0.0495 0.4130 7.9 1o4s:A
10 8t8a:A 583 24 0.0524 0.0223 0.5417 8.5 8jt7:A, 8t8a:B, 8t8a:C, 8t8a:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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