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BioLiP
>protein
VQNMMRQKEQEHMINWVEKRVVQSISTIAKCIADLKLLSKK

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wss:X 41 41 1.0000 1.0000 1.0000 5.62e-24
2 6zpo:b 209 47 1.0000 0.1962 0.8723 5.45e-21 2wss:T, 6z1u:b, 6zbb:b, 6zmr:b, 6zqm:b, 6zqn:b
3 3i5f:A 810 20 0.2195 0.0111 0.4500 3.3
4 7nac:w 672 23 0.2439 0.0149 0.4348 3.4 7naf:w, 7r6k:w, 7r7a:w, 7r7o:A, 7r7o:B
5 7u0h:w 321 23 0.2439 0.0312 0.4348 3.6
6 4tpn:A 386 27 0.2439 0.0259 0.3704 3.9
7 5d3u:A 403 27 0.2439 0.0248 0.3704 3.9 5d3u:B, 5d40:A, 5d40:B, 4l36:A, 4l36:B, 4tpo:A
8 2fkc:A 247 31 0.2439 0.0405 0.3226 5.0 2fkc:B, 2fkh:B, 2fl3:A, 2flc:A
9 6elz:w 436 23 0.2439 0.0229 0.4348 5.6 6em5:w
10 6ylx:w 360 23 0.2439 0.0278 0.4348 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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