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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTF

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7upg:A 75 73 1.0000 0.9733 1.0000 2.45e-48 8fug:A, 8fug:B, 8fug:C, 8fug:D, 8fug:E, 8fug:F, 8fug:G, 8fug:H, 8fug:I, 8fug:J, 8fug:K, 8fug:L, 8fug:M, 8fug:N, 8fug:O, 8fug:P, 8fug:Q, 8fug:R, 8fug:S, 8fug:T, 8fug:U, 8fug:V, 8fug:W, 7upg:F, 7upg:E, 7upg:B, 7upg:C, 7upg:D, 7upg:J, 7upg:I, 7upg:G, 7upg:H, 8uq7:A, 8uq7:B, 8uq7:C, 8uq7:D
2 8ttl:A 90 28 0.3836 0.3111 1.0000 4.23e-14 7sp1:B, 7sp1:C, 7sp1:F, 7sp1:G, 7sp1:J, 7sp1:L, 7sp1:N, 7sp1:A, 7sp1:D, 7sp1:E, 7sp1:H, 7sp1:I, 7sp1:K, 7sp1:M, 7sp1:O, 8ttl:B, 8ttl:C
3 8ttl:A 90 34 0.2192 0.1778 0.4706 1.25e-04 7sp1:B, 7sp1:C, 7sp1:F, 7sp1:G, 7sp1:J, 7sp1:L, 7sp1:N, 7sp1:A, 7sp1:D, 7sp1:E, 7sp1:H, 7sp1:I, 7sp1:K, 7sp1:M, 7sp1:O, 8ttl:B, 8ttl:C
4 2ayj:A 56 24 0.1644 0.2143 0.5000 1.9
5 5oql:a 179 41 0.1918 0.0782 0.3415 2.2 6rxt:CJ, 6rxu:CJ, 6rxv:CJ, 6rxx:CJ, 6rxy:CJ, 6rxz:CJ
6 7odv:DDD 595 25 0.1370 0.0168 0.4000 2.6 7odv:AAA, 7ogo:AAA, 7ogo:DDD, 7ogq:AAA, 7ogu:AAA, 7ogu:DDD, 7ogu:GGG, 7ogu:JJJ, 7ogz:AAA, 7ogz:DDD
7 3t7s:A 246 21 0.1096 0.0325 0.3810 3.0 3t7s:B, 3t7s:C, 3t7s:D, 3t7t:A, 3t7t:B, 3t7t:C, 3t7t:D
8 7p01:A 572 21 0.1507 0.0192 0.5238 4.6 7p01:B, 7p07:A, 7p07:B
9 3und:B 284 16 0.1233 0.0317 0.5625 8.1 3tmq:A, 3tmq:C, 3und:A, 3und:C, 3und:D
10 8hku:L40E 55 24 0.1370 0.1818 0.4167 9.4 8hkv:L40E, 8hky:L40E, 8hkz:L40E, 8hl1:L40E, 8hl2:L40E, 8hl3:L40E, 8hl4:L40E, 8hl5:L40E
11 7k3z:A 564 67 0.2740 0.0355 0.2985 9.8 7k3z:B, 7k3z:C, 7k3z:D, 7k3z:E, 7k3z:F, 7k3z:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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