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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPTKLEVVAATPTSLLISWDAPAVTVFFYVITYGETGHGVGAFQAFKVPGSKSTATISGLKPGVDYTITVYARGYSKQGP
YKPSPISINYRT

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l0f:H 94 92 0.9674 0.9468 0.9674 4.68e-61 7l0f:F, 7l0f:B, 7l0f:M, 7l0g:C, 7l0g:D, 7l0g:F, 7l0g:H
2 5mtm:B 92 92 0.7935 0.7935 0.7935 2.84e-43
3 5v7p:D 95 92 0.8152 0.7895 0.8152 1.07e-41
4 8f0m:B 91 97 0.7935 0.8022 0.7526 1.10e-38
5 4lxo:A 184 92 0.7500 0.3750 0.7500 6.29e-38 4lxo:B
6 4lxo:A 184 79 0.2391 0.1196 0.2785 1.37e-05 4lxo:B
7 5a43:C 96 93 0.7717 0.7396 0.7634 1.36e-37
8 6d0j:C 90 92 0.7065 0.7222 0.7065 1.75e-34 6d0k:C, 6d0n:C
9 6ux8:B 86 92 0.7065 0.7558 0.7065 3.18e-34
10 3ch8:A 190 92 0.7283 0.3526 0.7283 1.04e-31 2qbw:A
11 8vxu:E 90 94 0.7283 0.7444 0.7128 4.72e-30 7szt:F, 8tgy:C, 8tgy:D, 6wk9:C, 6wk9:G
12 4jmh:A 200 93 0.6848 0.3150 0.6774 1.48e-29 4jmg:A
13 3csb:A 464 94 0.7283 0.1444 0.7128 1.88e-27
14 2mnu:A 93 69 0.2717 0.2688 0.3623 2.46e-04
15 6gvk:A 201 92 0.2500 0.1144 0.2500 0.100 6gvl:A
16 6x39:A 100 77 0.2935 0.2700 0.3506 0.11
17 6tba:7A 292 37 0.1413 0.0445 0.3514 1.4 6tba:7C, 6tba:7B, 6teh:C
18 4ine:A 431 20 0.1087 0.0232 0.5000 4.0 4ine:B
19 1e3d:B 537 50 0.1739 0.0298 0.3200 4.8 1e3d:D
20 1unb:A 288 33 0.1196 0.0382 0.3333 5.7 1e5h:A, 1hjf:A, 2jb8:A, 1rxg:A, 1uo9:A, 1uob:A, 1w2a:X, 1w2n:A, 1w2o:A
21 6bt9:B 626 69 0.2174 0.0319 0.2899 5.9 6bt9:A
22 2zoo:A 438 29 0.1413 0.0297 0.4483 6.0
23 3ddv:B 139 41 0.1413 0.0935 0.3171 8.4 3ddv:D
24 6hiv:DA 1557 14 0.0870 0.0051 0.5714 8.8 6hiw:DA, 7pub:DA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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