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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VPETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYS
TREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGP
SENVRRLSRTDLTDYLNRHYKAPRMVLAAAGGVEHQQLLDLAQKHLSSVSPCRFTGSEIRHRDDALPLAHVAIAVEGPGW
ANPDNVTLQVANAIIGCQSFQTFNISYSDTGLLGAHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVS
HLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMF

The query sequence (length=395) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8iao:Aa 412 407 0.9975 0.9563 0.9681 0.0 8iar:Aa, 8ibd:AA, 8ibd:Aa, 8ibg:AA, 8ibg:Aa
2 7o3e:L 445 432 1.0000 0.8876 0.9144 0.0
3 1be3:A 446 432 0.8861 0.7848 0.8102 0.0 2a06:A, 1bgy:A, 1bgy:M, 4d6t:N, 4d6u:A, 4d6u:N, 7dgq:k, 7dgq:w, 7dgr:k, 7dgr:w, 7dgs:k, 7dgs:w, 7dkf:A1, 7dkf:M1, 6fo0:N, 6fo0:A, 6fo2:N, 6fo2:A, 5luf:c, 5luf:l, 5nmi:N, 5nmi:A, 1pp9:A, 1ppj:A, 6qbx:a3, 6qc3:a1, 7tz6:A, 7tz6:N, 2ybb:a, 2ybb:A
4 8bep:B 487 429 0.4911 0.3984 0.4522 4.02e-137 8bep:L, 8bpx:AB, 8bpx:BB, 8bq5:AB, 8bq5:BB, 8bq6:AB, 8bq6:BB
5 7jrg:A 487 429 0.4835 0.3922 0.4452 1.55e-136 8e73:A, 8e73:M, 7jrg:M, 7jrp:A, 7jrp:M
6 8q1b:A 443 435 0.5038 0.4492 0.4575 2.70e-124 8q1b:L
7 1hr6:D 443 408 0.4051 0.3612 0.3922 1.57e-96 1hr6:B, 1hr6:F, 1hr6:H, 1hr7:B, 1hr7:D, 1hr7:F, 1hr7:H, 1hr8:B, 1hr8:D, 1hr8:F, 1hr8:H, 1hr9:B, 1hr9:D, 1hr9:F, 1hr9:H
8 8e7s:A 431 434 0.3316 0.3039 0.3018 2.51e-51 8e7s:a, 8ec0:A, 8ec0:a
9 3hdi:A 414 406 0.2658 0.2536 0.2586 3.75e-44 3hdi:B
10 1pp9:O 424 419 0.2532 0.2358 0.2387 5.49e-27 2a06:B, 4d6t:B, 4d6t:O, 4d6u:B, 4d6u:O, 7dgq:l, 7dgq:x, 7dgr:l, 7dgr:x, 7dgs:l, 7dgs:x, 6fo0:O, 6fo0:B, 6fo2:O, 6fo2:B, 1pp9:B, 1ppj:O, 1ppj:B, 6qbx:a2, 6qbx:a4, 6qc3:a2, 6qc3:a4, 7tz6:B, 7tz6:O
11 7v4y:A 402 392 0.2658 0.2612 0.2679 3.02e-24
12 8ibd:AB 418 411 0.2304 0.2177 0.2214 1.09e-23 8iao:Ab, 8iar:Ab, 8ibd:Ab, 8ibg:AB, 8ibg:Ab
13 3amj:C 422 200 0.1544 0.1445 0.3050 4.34e-21 3amj:A
14 5euf:B 416 309 0.1873 0.1779 0.2395 8.62e-20 5euf:A
15 6ofs:A 905 215 0.1443 0.0630 0.2651 1.02e-12
16 5cio:A 770 209 0.1443 0.0740 0.2727 1.37e-06 5cio:B
17 1q2l:A 937 122 0.0835 0.0352 0.2705 1.94e-06
18 6b03:A 896 200 0.1139 0.0502 0.2250 2.10e-05 6b05:A, 6brs:A
19 4iof:A 932 298 0.1671 0.0708 0.2215 0.001
20 2g49:A 970 212 0.1114 0.0454 0.2075 0.12 6b3q:A, 6b3q:B, 6b70:A, 6b70:B, 6bfc:A, 6bfc:B, 6byz:A, 6byz:B, 5cjo:A, 3cww:B, 3cww:A, 4dtt:A, 4dtt:B, 4dwk:A, 4dwk:B, 3e4a:A, 3e4a:B, 3e4z:A, 3e4z:B, 3e50:A, 3e50:B, 6eds:A, 6eds:B, 2g47:A, 2g47:B, 2g48:A, 2g48:B, 2g49:B, 2g54:A, 2g54:B, 2g56:A, 2g56:B, 4gs8:A, 4gs8:B, 4gsc:A, 4gsc:B, 4gsf:A, 4gsf:B, 3h44:A, 3h44:B, 3hgz:A, 3hgz:B, 4ifh:A, 4ifh:B, 2jbu:A, 2jbu:B, 2jg4:A, 2jg4:B, 7k1d:A, 7k1d:B, 7k1e:A, 7k1e:B, 7k1f:A, 7k1f:B, 4lte:A, 4lte:B, 4m1c:A, 4m1c:B, 6mq3:A, 6mq3:B, 3n56:A, 3n56:B, 3n57:A, 3n57:B, 4nxo:A, 4nxo:B, 3ofi:A, 3ofi:B, 3p7l:A, 3p7o:A, 4pes:A, 4pes:B, 4pf7:A, 4pf7:B, 4pf9:A, 4pf9:B, 4pfc:A, 4pfc:B, 4qia:A, 4qia:B, 3qz2:A, 3qz2:B, 4ral:A, 4ral:B, 4re9:A, 4re9:B, 7rze:A, 7rzf:A, 7rzi:A, 7rzi:B, 3tuv:A, 2wby:A, 2wby:B, 2wc0:A, 2wc0:B, 2wk3:A, 2wk3:B, 5wob:A, 5wob:B, 5wob:C, 5wob:D, 5wob:E, 5wob:F, 5wob:G, 5wob:H, 2ypu:A, 2ypu:B
21 6z0p:A 242 47 0.0456 0.0744 0.3830 0.67 6z0p:B
22 8g5y:SA 222 72 0.0430 0.0766 0.2361 0.73 7a01:U3, 7a09:a, 5a2q:A, 5aj0:BA, 9bdl:AS00, 9bdn:AS00, 9bdp:AS00, 8bhf:B3, 9bkd:N, 9bln:N, 8btk:AZ, 7cpu:SA, 7cpv:SA, 4d5l:A, 4d61:A, 6d90:BB, 6d9j:BB, 9f1b:AZ, 9f1c:AZ, 9f1d:AZ, 6fec:f, 5flx:A, 6g18:A, 6g4s:A, 6g51:A, 6g53:A, 6g5h:A, 6g5i:A, 8g5z:SA, 8g60:SA, 8g61:SA, 8g6j:SA, 8glp:SA, 6gz3:BA, 6gz4:BA, 6gz5:BA, 6hcf:B1, 6hcj:B2, 6hcm:B1, 6hcq:B2, 8ifd:2n, 8ife:2n, 6ip5:2n, 6ip6:2n, 6ip8:2n, 3j7p:SA, 3j7r:SA, 3jag:AA, 3jah:AA, 3jai:AA, 3jaj:SA, 3jan:SA, 8jdj:x, 8jdk:x, 8jdl:x, 8jdm:x, 7jqb:B, 7jqc:B, 5k0y:f, 8k2c:SA, 7k5i:A, 4kzx:A, 4kzy:A, 4kzz:A, 5lks:SA, 7ls1:o2, 7ls2:o2, 5lzs:AA, 5lzt:AA, 5lzu:AA, 5lzv:AA, 5lzw:AA, 5lzx:AA, 5lzy:AA, 5lzz:AA, 7mdz:AA, 6mtb:AA, 6mtc:AA, 6mtd:AA, 6mte:AA, 7nwg:B2, 7nwh:AA, 7nwi:AA, 7o7y:AZ, 7o7z:AZ, 7o80:AZ, 7o81:AZ, 5oa3:A, 6ole:SA, 6olf:SA, 6olg:BA, 6oli:SA, 6olz:BA, 6om0:SA, 6om7:SA, 7oya:A2, 7oyb:A2, 7oyc:A2, 7oyd:AA, 8oz0:Q, 8p03:C, 8p09:C, 8p2k:AZ, 6p4g:B, 6p4h:B, 6p5i:B, 6p5j:B, 6p5k:B, 6p5n:B, 8pj1:N, 8pj2:N, 8pj3:N, 8pj4:N, 8pj5:N, 8pj6:N, 8ppk:A, 8ppl:AA, 8q7z:AZ, 8q87:AZ, 7qgg:SA, 8qoi:SA, 7qp6:N, 7qp7:N, 7qvp:SA, 7qvp:RA, 6qzp:SA, 7r4x:A, 6r5q:q, 6r6g:q, 6r6p:q, 6r7q:q, 8rg0:N, 8scb:AA, 6sgc:B1, 7syg:B, 7syh:B, 7syi:B, 7syj:B, 7syk:B, 7syl:B, 7sym:B, 7syn:B, 7syo:B, 7syp:B, 7syq:B, 7syr:B, 7sys:B, 7syt:B, 7syu:B, 7syv:B, 7syw:B, 7syx:B, 5t2c:Ao, 8t4s:A, 7toq:AS00, 7tor:AS00, 7tql:B, 7ucj:AA, 7uck:AA, 4ug0:SA, 4ujc:CA, 4ujd:CA, 4uje:BA, 4v6x:AA, 5vyc:A1, 5vyc:A2, 5vyc:A3, 5vyc:A4, 5vyc:A5, 5vyc:A6, 6w2s:B, 6w2t:B, 7wtw:A, 7wtx:A, 7wtz:A, 7wu0:A, 6xa1:SA, 7xnx:SA, 7xny:SA, 8xsx:SA, 8xsy:SA, 8xsz:SA, 8xxl:SA, 8xxm:SA, 8xxn:SA, 6y0g:SA, 8y0w:SA, 8y0x:SA, 6y2l:SA, 6y57:SA, 6yal:C, 6yam:C, 6yan:C, 6ybw:N, 8yoo:SA, 8yop:SA, 6z6l:SA, 6z6m:SA, 6z6n:SA, 7zjw:SL, 7zjx:SL, 6zlw:B, 6zm7:SA, 6zme:SA, 6zmi:SA, 6zmo:SA, 6zmt:B, 6zmw:N, 6zn5:B, 6zoj:A, 6zok:A, 6zon:a, 6zp4:a, 6zuo:A, 6zv6:A, 6zvh:A, 6zvj:a, 6zvk:U3, 6zxd:A, 6zxe:A, 6zxf:A, 6zxg:A, 6zxh:A
23 9bh5:AP 132 108 0.0633 0.1894 0.2315 1.7 9cai:AP
24 6jjj:A 151 47 0.0354 0.0927 0.2979 2.1 6jjj:B, 6jjj:C, 6jjj:D, 6jjj:E, 6jjj:F
25 7ml7:A 1216 119 0.0886 0.0288 0.2941 2.2
26 7r81:B2 209 74 0.0430 0.0813 0.2297 2.6 7olc:SA, 7old:SA, 8oo0:SA, 7z3n:SA, 7z3o:SA
27 8qeo:A 2146 107 0.0835 0.0154 0.3084 4.3
28 8qen:A 2363 107 0.0835 0.0140 0.3084 4.3 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
29 8y9b:B 1607 107 0.0835 0.0205 0.3084 4.5
30 3s5m:A 1094 235 0.1063 0.0384 0.1787 6.1 7di7:A, 7dij:A, 8ho4:A, 8ho5:A, 3s5h:A, 7vpe:A, 8wxw:A, 8wxz:A, 8wyu:A
31 7dia:A 1072 235 0.1063 0.0392 0.1787 6.2 3s5k:A, 8wyt:A, 8wyx:A, 8wyy:A
32 7ry3:C 1048 98 0.0709 0.0267 0.2857 7.3 7m4p:B
33 8eop:A 1687 73 0.0608 0.0142 0.3288 7.8
34 7vbc:A 1477 116 0.0759 0.0203 0.2586 8.1 7vba:A, 7vbb:A
35 8y9c:B 1609 107 0.0835 0.0205 0.3084 8.9
36 6oq5:A 2346 107 0.0835 0.0141 0.3084 9.1 6oq7:A, 7s0z:B, 7s0z:A
37 8ee6:A 1808 73 0.0608 0.0133 0.3288 9.1 8edw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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