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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VNQVATDRFIQDLERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRG
KSTFLNALIGENLLPSTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVE
YPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES
LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE
RAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRS
YVLNLGNTFENDFLRYQPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYN
QITDQITEKLTGKDVEDNSPGWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAVTGILLGPIGFA
LLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQT
REINRESEFNRLKNLQEDVIAQLQKIEAAYSNLLAYYSHH

The query sequence (length=680) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2j68:A 680 680 1.0000 1.0000 1.0000 0.0 2w6d:A, 2w6d:B
2 5oxf:B 591 207 0.0868 0.0998 0.2850 3.12e-12
3 5oxf:A 703 207 0.0868 0.0839 0.2850 3.50e-12
4 6j72:A 561 179 0.0632 0.0766 0.2402 3.80e-06
5 5oxf:C 601 224 0.0809 0.0915 0.2455 4.21e-06 5oxf:D
6 5ksz:A 398 83 0.0412 0.0704 0.3373 0.003 5kso:A, 5ksp:A, 5ksp:B, 5ksy:A, 5kty:A, 5ku1:A
7 6jfk:A 428 269 0.0971 0.1542 0.2454 0.018 6jfm:A, 6jfm:B
8 7egq:X 524 46 0.0265 0.0344 0.3913 0.42 5c8s:B, 5c8s:D, 5c8t:B, 5c8t:D, 5c8u:B, 5c8u:D, 7diy:B, 7egq:K, 7eiz:K, 9fw2:B, 9fz4:B, 9fzk:B, 7mc5:A, 7mc6:A, 7n0b:B, 7n0c:B, 7n0d:B, 7n0d:D, 7n0d:F, 7n0d:H, 5nfy:A, 5nfy:B, 5nfy:C, 5nfy:D
9 7aml:A 596 95 0.0368 0.0419 0.2632 0.68 7amk:A, 7amk:B, 7aml:D
10 6jjm:A 452 53 0.0235 0.0354 0.3019 2.1 5b2d:A, 5b2d:B, 6jjm:B, 6jjn:A, 6jjn:B
11 9bht:C 282 36 0.0235 0.0567 0.4444 2.5 9bht:D, 9bhw:A, 9bhw:D
12 8eti:b 391 88 0.0294 0.0512 0.2273 3.0 8esr:b, 8etg:b
13 6ifl:G 273 57 0.0309 0.0769 0.3684 3.1 6ifu:G
14 8fl4:SR 593 86 0.0382 0.0438 0.3023 3.1 8fkr:SR, 8fks:SR
15 8ir1:4 620 86 0.0382 0.0419 0.3023 3.3 8fkt:SR, 8fku:SR, 8fkv:SR, 8fkw:SR, 8fkx:SR, 8fky:SR, 8fkz:SR, 8fl0:SR, 8fl2:SR, 8fl3:SR, 8fl6:SR, 8fl7:SR, 8fl9:SR, 8fla:SR, 8flb:SR, 8flc:SR, 8fld:SR, 8fle:SR, 8flf:SR, 8idt:4, 8idy:4, 8ie3:4, 8ine:4, 8inf:4, 8ink:4, 8ipd:4, 8ipx:4, 8ipy:4, 8ir3:4, 6lss:4, 6lu8:4
16 8etc:b 415 88 0.0294 0.0482 0.2273 3.8 8esq:b, 8etj:b
17 6uek:D 585 51 0.0279 0.0325 0.3725 4.5
18 6ifn:B 297 57 0.0309 0.0707 0.3684 4.8 6ifk:B, 6ifr:B, 6ify:B, 6ifz:B, 6ig0:B, 6nud:I, 6nue:I
19 2w2l:A 346 28 0.0191 0.0376 0.4643 5.4 2w2l:B, 2w2l:C, 2w2l:D
20 2ol1:C 125 64 0.0265 0.1440 0.2812 6.1 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
21 8rev:A 709 64 0.0250 0.0240 0.2656 7.0
22 4h1v:A 358 33 0.0191 0.0363 0.3939 7.2
23 6iae:B 148 25 0.0206 0.0946 0.5600 8.0 6ia7:B
24 5wp9:A 590 33 0.0191 0.0220 0.3939 8.1 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
25 6s5h:A 175 60 0.0221 0.0857 0.2500 8.3 6hdu:A, 6hdu:B, 6hdu:C, 6hdu:D
26 7c3k:B 389 41 0.0206 0.0360 0.3415 8.6 7c3k:A, 8jqz:A, 8jqz:B
27 7vex:A 412 101 0.0338 0.0558 0.2277 9.1 8h4m:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218