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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VNIYGLTATALFIIIPTSFLLILYVKTAST

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kac:M 30 30 1.0000 1.0000 1.0000 6.26e-14 6kac:m, 6kad:M, 6kad:m
2 7pi5:M 32 30 0.9000 0.8438 0.9000 4.57e-12 7pi5:m, 7pin:M, 7pin:m, 7pin:M1, 7pin:m1, 7piw:M, 7piw:m, 7piw:M1, 7piw:m1, 7pnk:M, 7pnk:m
3 8bd3:m 57 29 0.8667 0.4561 0.8966 7.41e-11
4 5xnl:M 33 29 0.6667 0.6061 0.6897 9.43e-08 7oui:M, 7oui:m, 5xnl:m, 5xnm:M, 5xnm:m
5 3a0b:M 36 30 0.5667 0.4722 0.5667 1.84e-06 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
6 8wql:MD 36 29 0.5000 0.4167 0.5172 2.51e-05 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
7 7ymi:M 31 29 0.5667 0.5484 0.5862 3.30e-05 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
8 8tow:M 31 29 0.4667 0.4516 0.4828 3.10e-04 8tow:m
9 4yuu:m2 40 26 0.3000 0.2250 0.3462 1.4 4yuu:m1, 4yuu:M2
10 8dtz:A 4061 29 0.3667 0.0027 0.3793 1.7 8dtz:B, 8dtz:C, 8dtz:D
11 7ua3:A 4443 23 0.2667 0.0018 0.3478 3.6 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
12 8uxl:A 4232 23 0.2667 0.0019 0.3478 3.6 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
13 7vml:A 4044 23 0.2667 0.0020 0.3478 3.6 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D
14 8uxh:A 4004 23 0.2667 0.0020 0.3478 3.6 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
15 8dty:A 4004 23 0.2667 0.0020 0.3478 3.6 8dty:B, 8dty:C, 8dty:D
16 6wou:A 3921 23 0.2667 0.0020 0.3478 3.6 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
17 8dvv:A 3886 23 0.2667 0.0021 0.3478 3.6 8dvv:B, 8dvv:C, 8dvv:D
18 6jiy:A 3521 23 0.2667 0.0023 0.3478 3.6 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
19 6jrs:A 3488 23 0.2667 0.0023 0.3478 3.6 6jrs:D, 6jrs:G, 6jrs:J
20 6jgz:B 3485 23 0.2667 0.0023 0.3478 3.6 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
21 5go9:A 3423 23 0.2667 0.0023 0.3478 3.6 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
22 7tzc:A 4404 23 0.3000 0.0020 0.3913 6.3 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
23 8vk4:D 4379 23 0.3000 0.0021 0.3913 6.3 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
24 7m6a:A 4306 23 0.3000 0.0021 0.3913 6.3 7m6a:G, 7m6a:B, 7m6a:I, 7m6l:A, 7m6l:G, 7m6l:B, 7m6l:I
25 7t65:A 4252 23 0.3000 0.0021 0.3913 6.3 7t64:A, 7t64:B, 7t64:C, 7t64:D, 7t65:B, 7t65:C, 7t65:D
26 6wot:A 4197 23 0.3000 0.0021 0.3913 6.3 6wot:B, 6wot:C, 6wot:D
27 5tb3:B 4196 23 0.3000 0.0021 0.3913 6.3 7aih:UB, 7am2:U5, 7am2:U2, 7ane:UB, 7aoi:UK, 6bbm:W, 6c5l:BJ, 6c5l:DJ, 9f1c:BK, 7f4v:aJ, 7f4v:bJ, 7f4v:cJ, 6fg3:A, 6fg3:B, 6fg3:C, 6fg3:D, 1fka:Q, 1fka:T, 5gan:x, 6h8k:Y, 6h8k:j, 6hiv:AB, 6hix:AB, 5j4z:H, 5j4z:E, 5j4z:F, 5j4z:I, 5j7y:H, 5j7y:E, 5j7y:F, 5j7y:I, 5j8k:H, 5j8k:E, 5j8k:F, 5j8k:I, 6jlu:N, 6jlu:n, 7jmf:B, 7jmf:E, 7jmf:G, 7jmf:I, 7jmg:B, 7jmg:E, 7jmg:I, 7jmg:G, 7jmh:B, 7jmh:E, 7jmh:G, 7jmh:I, 7jmi:B, 7jmi:E, 7jmi:G, 7jmi:I, 7jmj:B, 7jmj:E, 7jmj:G, 7jmj:I, 5jpq:n, 5jpq:C, 7l8w:H, 5lc5:P, 5ldw:P, 5ldx:P, 7lh5:BJ, 7lh5:DJ, 5lj3:x, 5lj5:x, 5luf:E, 5luf:F, 5luf:G, 5luf:I, 5nvs:I, 5nvs:K, 5nvs:J, 5nvs:L, 5nvu:K, 5nvu:M, 5nvu:L, 5nvu:N, 2o01:K, 6o1o:B, 6o1o:C, 6o1o:D, 6o1o:E, 6o1o:I, 6o1o:J, 6o1o:K, 5o31:P, 5ot7:l, 7pkq:D, 7pkt:X, 7pkt:C, 7pub:U7, 7pub:UE, 6pv6:B, 6pv6:E, 6pv6:I, 6pv6:G, 1pyh:C, 1pyh:E, 1pyh:K, 1pyh:S, 1pyh:Y, 6q95:H, 7qwq:s, 5t15:B, 5t15:E, 5t15:I, 5t15:G, 5t9m:B, 5t9m:E, 5t9m:I, 5t9m:G, 5t9n:B, 5t9n:E, 5t9n:I, 5t9n:G, 5t9r:B, 5t9r:E, 5t9r:I, 5t9r:G, 5t9s:B, 5t9s:E, 5t9s:I, 5t9s:G, 5t9v:B, 5t9v:G, 5t9v:I, 5t9v:E, 5ta3:B, 5ta3:G, 5ta3:I, 5ta3:E, 5tal:B, 5tal:G, 5tal:I, 5tal:E, 5tam:B, 5tam:E, 5tam:I, 5tam:G, 5tan:B, 5tan:E, 5tan:I, 5tan:G, 5tap:B, 5tap:E, 5tap:I, 5tap:G, 5taq:B, 5taq:E, 5taq:I, 5taq:G, 5tas:B, 5tas:I, 5tas:E, 5tas:G, 5tat:B, 5tat:I, 5tat:E, 5tat:G, 5tau:B, 5tau:I, 5tau:E, 5tau:G, 5tav:B, 5tav:E, 5tav:I, 5tav:G, 5taw:B, 5taw:G, 5taw:I, 5taw:E, 5tax:B, 5tax:I, 5tax:G, 5tax:E, 5tay:B, 5tay:G, 5tay:I, 5tay:E, 5taz:B, 5taz:I, 5taz:G, 5taz:E, 5tb0:B, 5tb0:G, 5tb0:E, 5tb0:I, 5tb1:B, 5tb1:I, 5tb1:E, 5tb1:G, 5tb2:B, 5tb2:I, 5tb2:E, 5tb2:G, 5tb3:E, 5tb3:I, 5tb3:G, 5tb4:B, 5tb4:E, 5tb4:I, 5tb4:G, 7tdh:A, 7tdh:B, 7tdh:C, 7tdh:D, 8tug:M, 8tvp:M, 8tvq:M, 8tvs:M, 8tye:L, 5tzs:y, 5tzs:n, 5tzs:o, 4uq8:E, 4uq8:F, 4uq8:G, 4uq8:I, 4v3p:SW, 4v3p:LL, 4v5e:BJ, 4v5e:DJ, 4v5f:BJ, 4v5f:BL, 4v5f:Bl, 4v5f:DJ, 4v5f:DL, 4v5f:Dl, 4v5g:BJ, 4v5g:DJ, 4v5j:BJ, 4v5j:DJ, 4v5k:BJ, 4v5k:DJ, 4v5l:BJ, 4v5p:BJ, 4v5p:DJ, 4v5q:BJ, 4v5q:DJ, 4v5r:BJ, 4v5r:DJ, 4v5s:BJ, 4v5s:DJ, 4v6i:AW, 4v6i:Ab, 4v6i:BL, 4v7r:Ab, 4v7r:Ac, 4v7r:Ad, 4v7r:Ah, 4v7r:Bh, 4v7r:Cb, 4v7r:Cc, 4v7r:Cd, 4v7r:Ch, 4v7r:Dh, 4v8n:BJ, 4v8n:DJ, 4v8o:BJ, 4v8q:AJ, 4v8u:BJ, 4v8u:DJ, 4v8x:BJ, 4v8x:DJ, 4v90:BJ, 4v9h:BJ, 4v9h:BL, 4v9i:BJ, 4v9i:DJ, 4v9j:BJ, 4v9j:DJ, 4v9k:BJ, 4v9k:DJ, 4v9l:BJ, 4v9l:DJ, 4v9m:BJ, 4v9m:DJ, 7vd5:5, 6w1s:G, 4w29:BJ, 4w29:DJ, 8wb4:g, 8wb4:G, 5wlc:SX, 6wmt:K, 4wt8:CJ, 4wt8:DJ, 5wyj:AA, 5wyj:UA, 5wyj:UB, 5wyk:AA, 5wyk:UA, 5wyk:UB, 4wz7:Z, 4wz7:AN, 8xkl:G, 6xyw:BI, 6xyw:BJ, 6xyw:BK, 7y3f:K, 6z1p:AD, 6z1p:BC, 5zep:0, 6zm5:v
28 6foo:A 4168 23 0.3000 0.0022 0.3913 6.3 5dat:m2, 5dc3:m2, 5dgv:m2, 5fci:m2, 5fcj:m2, 6foo:B, 6foo:C, 6foo:D, 5i4l:m2, 5it7:KK, 6j3z:20, 6j3z:21, 5j4z:B, 6j40:20, 6j40:40, 6j40:21, 6j40:41, 8j5k:4, 8j5k:9, 5j7y:B, 5j8k:B, 7lh5:BK, 7lh5:DK, 5luf:B, 5lyb:m2, 5mrc:dd, 5mre:dd, 5mrf:dd, 5obm:m2, 5on6:m2, 5ot7:m, 7pkq:V, 7pkt:Y, 6q95:I, 5tga:m2, 5tzs:Z, 5tzs:m, 4u3m:m2, 4u3n:m2, 4u3u:m2, 4u4n:m2, 4u4o:m2, 4u4q:m2, 4u4r:m2, 4u4u:m2, 4u4y:m2, 4u4z:m2, 4u50:m2, 4u51:m2, 4u52:m2, 4u53:m2, 4u55:m2, 4u56:m2, 4u6f:m2, 4uq8:B, 6uz7:AK, 4v3p:SG, 4v5g:BK, 4v5g:DK, 4v5l:BK, 4v5p:BK, 4v5p:DK, 4v5q:BK, 4v5q:DK, 4v5r:BK, 4v5r:DK, 4v5s:BK, 4v5s:DK, 4v6i:AG, 4v88:DK, 4v8o:BK, 4v8q:AK, 4v8t:K, 4v8y:BK, 4v8z:BK, 4v90:BK, 8w4p:4, 6woo:K, 7y1a:A, 7y5e:A8, 7y5e:AC, 7y7a:AN, 7y7a:AY, 5z3g:d
29 7tdg:A 4134 23 0.3000 0.0022 0.3913 6.3 7tdg:C, 7tdg:D, 7tdg:B, 7tdi:B, 7tdi:C, 7tdi:D, 7tdi:A, 7tdj:A, 7tdj:B, 7tdj:C, 7tdj:D, 7tdk:A, 7tdk:B, 7tdk:C, 7tdk:D
30 7k0s:A 4110 23 0.3000 0.0022 0.3913 6.3 7k0s:B, 7k0s:D, 7k0s:C, 7k0t:A, 7k0t:B, 7k0t:D, 7k0t:C
31 7cf9:A 3949 23 0.3000 0.0023 0.3913 6.3 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
32 8dve:G 3944 23 0.3000 0.0023 0.3913 6.3 8dtb:A, 8dve:D, 8dve:A, 8dve:J
33 8duj:G 3933 23 0.3000 0.0023 0.3913 6.3
34 7umz:A 3927 23 0.3000 0.0023 0.3913 6.3 6g4s:s, 6g4w:s, 5j4z:G, 5j7y:G, 5j8k:G, 5tzs:Q, 7umz:D, 7umz:B, 7umz:C, 5wyj:UC, 5wyj:AG, 5wyk:AG, 5wyk:UC, 4wz7:A, 6xyw:AP
35 8duj:J 3892 23 0.3000 0.0023 0.3913 6.3
36 8duj:D 3865 23 0.3000 0.0023 0.3913 6.3
37 8duj:A 3823 23 0.3000 0.0024 0.3913 6.3
38 6x33:B 3816 23 0.3000 0.0024 0.3913 6.3 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
39 6x35:B 3801 23 0.3000 0.0024 0.3913 6.3 6x35:E, 6x35:H, 6x35:K
40 6x32:B 3798 23 0.3000 0.0024 0.3913 6.3 6x32:E, 6x32:H, 6x32:K
41 6w1n:B 3719 23 0.3000 0.0024 0.3913 6.3 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
42 3j8h:A 3660 23 0.3000 0.0025 0.3913 6.3 3j8h:C, 3j8h:E, 3j8h:G
43 5gky:A 3660 23 0.3000 0.0025 0.3913 6.3 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
44 8sew:A 629 23 0.3000 0.0143 0.3913 8.9 8seu:A, 8seu:B, 8seu:C, 8seu:D, 8sev:A, 8sev:B, 8sev:C, 8sev:D, 8sew:B, 8sew:C, 8sew:D, 8sex:A, 8sex:B, 8sex:C, 8sex:D, 8sey:A, 8sey:B, 8sey:C, 8sey:D, 8sez:A, 8sez:B, 8sez:C, 8sez:D, 8sf0:A, 8sf0:B, 8sf0:C, 8sf0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218