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BioLiP
>protein
VLPGLNYVHSGFPAPGLRQINRHITGHDDNGKSVFLSTDHGDHHRIMGEKQAVANILYSTQETPVQLNGNVDIDKAAKEE
PPLHYHNGSIVRMIDFAPAVESPLHRAVSIDYGIVVEGVFKLVLDSGEERIMRQGDVSVQRATAHKWINITDNGTAPGRM
MWILLDCHDVVVNGQVMEGYLGD

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8x0v:E 189 183 1.0000 0.9683 1.0000 1.10e-136 8x0v:A, 8x0v:B, 8x0v:C, 8x0v:D, 8x0v:F, 8x0v:G, 8x0v:H, 8x0v:I, 8x0v:J, 8x0v:K, 8x0v:L
2 8pjb:A 962 37 0.0710 0.0135 0.3514 1.5 8b9g:A, 8b9k:A, 8pjj:A
3 4maf:B 404 47 0.0929 0.0421 0.3617 2.9 4maf:A, 4maf:C, 4maf:D, 4maf:E, 4maf:F, 4maf:G, 4maf:H
4 5yzg:D 1908 31 0.0546 0.0052 0.3226 7.9 6ahd:D, 8bc8:B, 8bc9:B, 8bca:B, 8bcb:B, 8bcc:B, 8bcd:B, 8bce:B, 8bcf:B, 8bcg:B, 8bch:B, 7bdi:B, 7bdj:B, 7bdk:B, 7bdl:B, 4f92:B, 4f93:B, 6ff7:r, 8h6k:5D, 8h6l:5D, 4kit:B, 5o9z:C, 7os1:B, 8qo9:B, 8qzs:B, 5urj:A, 5urk:A, 5urm:A, 5urm:B, 5xjc:D
5 8b6f:A5 282 53 0.0929 0.0603 0.3208 8.3 8bqs:A5
6 1o9j:A 494 45 0.0765 0.0283 0.3111 9.7 1o9j:B, 1o9j:C, 1o9j:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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