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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VLGSPAMQRIQGARVLVSGLQGLGAEVAKNLVLMGVGSLTLHDPHPTCWSDLAAQFLLSEQDLERSRAEASQELLAQLNR
AVQVVVHTGDITEDLLLDFQVVVLTAAKLEEQLKVGTLCHKHGVCFLAADTRGLVGQLFCDFGEDFTVQDPTEAEPLTAA
IQHISQGSPGILTLRKGANTHYFRDGDLVTFSGIEGMVELNDCDPRSIHVREDGSLEIGDTTTFSRYLRGGAITEVKRPK
TVRHKSLDTALLQPHVVAQSSQEVHHAHCLHQAFCALHKFQHLHGRPPQPWDPVDAETVVGLARDLEPLKRTEEEPLEEP
LDEALVRTVALSSAGVLSPMVAMLGAVAAQEVLKAISRKFMPLDQWLYFDALDCLPEDGELLPSPEDCALRGSRYDGQIA
VFGAGFQEKLRRQHYLLVGAGAIGCELLKVFALVGLGAGNSGGLTVVDMDHIERSNLSRQFLFRSQDVGRPKAEVAAAAA
RGLNPDLQVIPLTYPLDPTTEHIYGDNFFSRVDGVAAALDSFQARRYVAARCTHYLKPLLEAGTSGTWGSATVFMPHVTE
AYRAPASAAASEDAPYPVCTVRYFPSTAEHTLQWARHEFEELFRLSAETINHHQQAHTSLADMDEPQTLTLLKPVLGVLR
VRPQNWQDCVAWALGHWKLCFHYGIKQLLRHFPPNKVLEDGTPFWSGPKQCPQPLEFDTNQDTHLLYVLAAANLYAQMHG
LPGSQDWTALRELLKLLPQPDPQQMAPIFASNLELASASAEFGPEQQKELNKALEVWSVGPPLKPLMFEKDDDSNFHVDF
VVAAASLRCQNYGIPPVNRAQSKRIVGQIIPAIATTTAAVAGLLGLELYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFA
PAIQTFHHLKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLYAAGWSPEKQAQHLPLRVTELVQQLTG
QAPAPGQRVLVLELSCEGDDEDTAFPPLHYEL

The query sequence (length=992) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8sea:A 992 992 1.0000 1.0000 1.0000 0.0 8se9:A, 8seb:A, 8sv8:A
2 8oif:A 704 584 0.5464 0.7699 0.9281 0.0
3 8oif:A 704 172 0.1653 0.2330 0.9535 1.59e-99
4 8oif:A 704 90 0.0272 0.0384 0.3000 0.007
5 6dc6:C 996 1006 0.4657 0.4639 0.4592 0.0 6dc6:A, 1z7l:A, 1z7l:B, 1z7l:C
6 4ii3:A 986 1001 0.3881 0.3905 0.3846 0.0 9b5c:A, 9b5d:A, 9b5e:A, 9b5f:A, 9b5g:A, 9b5h:A, 9b5i:A, 9b5j:A, 9b5k:A, 9b5l:A, 9b5m:A, 9b5n:A, 9b5o:A, 9b5p:A, 9b5q:A, 9b5r:A, 9b5s:A, 9b5t:A, 9b5u:A, 9b5v:A, 9b5w:A, 9b5x:A, 4ii2:A, 4ii3:C, 6o82:A, 6o82:C, 6o83:A, 6o83:C, 5um6:A
7 5l6i:A 1007 1021 0.3871 0.3813 0.3761 0.0 3cmm:A, 3cmm:C, 5l6h:A, 5l6h:C, 5l6i:C, 5l6j:A, 5l6j:C, 4nnj:A, 4nnj:C, 6nya:A, 6nya:D, 6zhu:A, 6zhu:E, 6zhu:C, 6zhu:G, 7zh9:A
8 7k5j:I 979 1007 0.3831 0.3882 0.3774 0.0 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
9 7sol:A 1011 1027 0.3800 0.3729 0.3671 0.0 7pvn:A
10 7pvn:B 990 1014 0.3770 0.3778 0.3688 0.0 7sol:C
11 6xoi:B 403 188 0.0696 0.1712 0.3670 1.77e-27
12 6xoi:B 403 111 0.0403 0.0993 0.3604 1.00e-08
13 6xoi:B 403 134 0.0413 0.1017 0.3060 4.44e-08
14 3kyd:B 477 188 0.0696 0.1447 0.3670 3.64e-27
15 3kyd:B 477 66 0.0312 0.0650 0.4697 8.29e-09
16 3kyd:B 477 134 0.0413 0.0860 0.3060 4.08e-08
17 3kyc:B 548 188 0.0696 0.1259 0.3670 7.16e-27 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E
18 3kyc:B 548 69 0.0323 0.0584 0.4638 1.33e-08 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E
19 3kyc:B 548 134 0.0413 0.0748 0.3060 5.73e-08 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E
20 2nvu:B 789 193 0.0665 0.0837 0.3420 6.36e-25 3dbh:B, 3dbh:D, 3dbh:F, 3dbh:H, 3dbl:B, 3dbl:D, 3dbl:F, 3dbl:H, 3dbr:B, 3dbr:D, 3dbr:F, 3dbr:H, 3gzn:B, 3gzn:D, 1r4m:F, 1r4m:H, 1r4n:B, 1r4n:D, 1r4n:F, 1r4n:H, 1tt5:B, 1tt5:D, 1yov:B, 1yov:D
21 2nvu:B 789 119 0.0353 0.0444 0.2941 3.72e-05 3dbh:B, 3dbh:D, 3dbh:F, 3dbh:H, 3dbl:B, 3dbl:D, 3dbl:F, 3dbl:H, 3dbr:B, 3dbr:D, 3dbr:F, 3dbr:H, 3gzn:B, 3gzn:D, 1r4m:F, 1r4m:H, 1r4n:B, 1r4n:D, 1r4n:F, 1r4n:H, 1tt5:B, 1tt5:D, 1yov:B, 1yov:D
22 2nvu:B 789 84 0.0232 0.0292 0.2738 0.009 3dbh:B, 3dbh:D, 3dbh:F, 3dbh:H, 3dbl:B, 3dbl:D, 3dbl:F, 3dbl:H, 3dbr:B, 3dbr:D, 3dbr:F, 3dbr:H, 3gzn:B, 3gzn:D, 1r4m:F, 1r4m:H, 1r4n:B, 1r4n:D, 1r4n:F, 1r4n:H, 1tt5:B, 1tt5:D, 1yov:B, 1yov:D
23 6cwy:D 487 188 0.0605 0.1232 0.3191 7.60e-18
24 6cwy:D 487 69 0.0323 0.0657 0.4638 1.47e-08
25 6cwy:D 487 136 0.0383 0.0780 0.2794 0.008
26 1zfn:A 244 165 0.0534 0.2172 0.3212 4.12e-14 1zfn:B, 1zfn:C, 1zfn:D, 1zkm:A, 1zkm:B, 1zkm:C, 1zkm:D, 1zud:1, 1zud:3
27 1zfn:A 244 136 0.0403 0.1639 0.2941 2.90e-09 1zfn:B, 1zfn:C, 1zfn:D, 1zkm:A, 1zkm:B, 1zkm:C, 1zkm:D, 1zud:1, 1zud:3
28 1jw9:B 240 163 0.0524 0.2167 0.3190 1.52e-12 1jwa:B, 1jwb:B
29 1jw9:B 240 72 0.0242 0.1000 0.3333 3.07e-04 1jwa:B, 1jwb:B
30 1jw9:B 240 68 0.0181 0.0750 0.2647 1.1 1jwa:B, 1jwb:B
31 4yed:D 255 153 0.0433 0.1686 0.2810 4.28e-09 4d79:A, 4d79:B, 4d79:C, 4d79:D, 4d7a:A, 4d7a:B, 4d7a:D, 4rdh:A, 4rdh:B, 4rdh:C, 4rdh:D, 4rdi:A, 4rdi:B, 4rdi:C, 4rdi:D, 4yed:A, 4yed:B, 4yed:C
32 4yed:D 255 100 0.0272 0.1059 0.2700 3.32e-04 4d79:A, 4d79:B, 4d79:C, 4d79:D, 4d7a:A, 4d7a:B, 4d7a:D, 4rdh:A, 4rdh:B, 4rdh:C, 4rdh:D, 4rdi:A, 4rdi:B, 4rdi:C, 4rdi:D, 4yed:A, 4yed:B, 4yed:C
33 3h5a:C 358 133 0.0363 0.1006 0.2707 4.59e-09 3h5a:A, 3h5a:B, 3h5a:D, 3h5n:A, 3h5n:B, 3h5n:C, 3h5n:D, 3h5r:A, 3h5r:B, 3h5r:C, 3h5r:D, 3h9g:A, 3h9g:B, 3h9g:C, 3h9g:D, 3h9j:A, 3h9j:B, 3h9j:C, 3h9j:D, 3h9q:A, 3h9q:B, 3h9q:C, 3h9q:D, 6om4:A, 6om4:B
34 3h5a:C 358 76 0.0212 0.0587 0.2763 0.001 3h5a:A, 3h5a:B, 3h5a:D, 3h5n:A, 3h5n:B, 3h5n:C, 3h5n:D, 3h5r:A, 3h5r:B, 3h5r:C, 3h5r:D, 3h9g:A, 3h9g:B, 3h9g:C, 3h9g:D, 3h9j:A, 3h9j:B, 3h9j:C, 3h9j:D, 3h9q:A, 3h9q:B, 3h9q:C, 3h9q:D, 6om4:A, 6om4:B
35 6yub:A 423 163 0.0444 0.1040 0.2699 2.02e-07 6yub:B, 6yuc:D, 6z6s:DDD
36 6yub:A 423 54 0.0181 0.0426 0.3333 5.1 6yub:B, 6yuc:D, 6z6s:DDD
37 4gsl:A 598 89 0.0312 0.0518 0.3483 2.82e-06 4gsl:B, 3rui:A, 3t7e:A, 3t7g:B, 3t7g:A, 3vh1:A, 3vh2:A, 3vh3:A, 3vh4:A, 5yec:A, 5yec:C
38 4gsk:B 572 89 0.0312 0.0542 0.3483 3.08e-06 4gsk:A
39 8ide:A 929 98 0.0302 0.0323 0.3061 1.99e-04
40 8ide:A 929 95 0.0302 0.0323 0.3158 0.001
41 6h77:B 302 115 0.0323 0.1060 0.2783 4.95e-04 3guc:A, 6h77:A, 6h77:C, 6h77:D, 6h78:A, 6h78:B, 6h78:C, 6h78:D, 6h78:E, 6h78:F, 6h78:G, 6h78:H, 6h78:I, 6h78:J, 6h78:K, 6h78:L, 6h78:M, 6h78:N, 6h78:O, 6h78:P, 3h8v:A, 5iaa:A, 5l95:A
42 8tz0:A 505 102 0.0393 0.0772 0.3824 0.002 8tyz:A, 8tz0:B
43 3mg9:A 255 47 0.0161 0.0627 0.3404 0.24 3mgc:A
44 7rh8:A 212 117 0.0333 0.1557 0.2821 0.24
45 3mgb:A 286 47 0.0161 0.0559 0.3404 0.26 3mgb:B
46 2nuy:A 288 81 0.0212 0.0729 0.2593 0.59 2nuy:B
47 7tsq:B 208 194 0.0474 0.2260 0.2423 3.9
48 4k28:A 266 33 0.0151 0.0564 0.4545 4.0 4k28:B
49 7to3:A 568 92 0.0242 0.0423 0.2609 4.4 7to3:B, 7tqd:A, 7tsq:A, 7tsx:B, 7tsx:A
50 7za1:E 251 66 0.0181 0.0717 0.2727 6.0 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
51 7dg2:A 231 76 0.0232 0.0996 0.3026 6.9
52 3l8k:A 458 34 0.0121 0.0262 0.3529 7.9 3l8k:B
53 4g2t:A 356 65 0.0202 0.0562 0.3077 8.5
54 5u2w:A 246 30 0.0151 0.0610 0.5000 9.1 5u2w:B, 5u2w:C, 5u2w:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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