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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VKPWLFLIKPYEGESLSHFLGRFRRANHLSASGLGTLAGIGAIVARWERFHFNPRPSQQELEAIASVVEVDAQRLAQMLP
PAGVGMQHEPIRLCGACYAESPCHRIEWQYKSVWKCDRHQLKILAKCPNCQAPFKMPALWEDGCCHRCRMPFAEMAKLQK
V

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7svu:X 165 160 0.9938 0.9697 1.0000 6.69e-119 8bd4:S, 8bd4:R, 8bd4:T, 8bd5:Q, 8ea3:Q, 8ea4:Q, 7oxd:A, 8rdu:C, 8rkt:C
2 5xxb:W 127 58 0.0870 0.1102 0.2414 1.1
3 3n71:A 468 45 0.0745 0.0256 0.2667 1.6
4 8j78:I 651 53 0.0932 0.0230 0.2830 1.9 8j78:C, 8j7d:D, 8j7d:F, 8j7d:I, 8j7d:L, 8jaw:A, 8jaw:C, 8jaw:E, 8jaw:F, 8jaw:H, 8jaw:K, 8k2v:A, 8k2v:B, 8k2v:C, 8k2v:D, 8k2v:E, 8k2v:F
5 7r7j:B 574 73 0.1242 0.0348 0.2740 2.4 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
6 7u5d:I 387 37 0.0807 0.0336 0.3514 2.6 7u5e:I
7 1hyu:A 521 68 0.0994 0.0307 0.2353 2.9 1fl2:A, 4o5q:A, 4o5u:A, 4xvg:A, 4ykf:A, 4ykg:A
8 6dwn:D 453 56 0.1180 0.0419 0.3393 4.1
9 4i8v:A 477 56 0.1180 0.0398 0.3393 4.4 6dwm:A, 6dwm:B, 6dwm:C, 6dwm:D, 6dwn:A, 6dwn:B, 6dwn:C, 4i8v:B, 4i8v:C, 4i8v:D, 6o5y:A, 6o5y:B, 6o5y:C, 6o5y:D, 6udl:A, 6udl:B, 6udl:C, 6udl:D, 6udm:A, 6udm:B, 6udm:C, 6udm:D
10 8fcu:P 327 44 0.0870 0.0428 0.3182 4.9 8fcv:P, 8ff4:P
11 4yzr:A 388 32 0.0683 0.0284 0.3438 6.4
12 2hi4:A 480 56 0.1118 0.0375 0.3214 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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