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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VKPQESQLSFTATPGSNPNVVTLKNTSSLKGLVVTWDLGNGVTAKGEEVVASYPFANTYTIAMTAYNTGGSTTITQTITI
ANNDESQIEPKAIILAGGLTGSKTWVFDRAHDGHFGVGPGAGNPDYNGTPSWWSCPAEGKAECALYENEFSFHLDGGYNM
TWVNKGKIYTNGAGKDKLPGVATVPGAGDFDVEYIPKEAYTFTVDGDKLKLSDDAFFGHFAGTSTYTIKTLNENELYLEC
SSAVESGNGWWYRFVPKK

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kv7:BBB 258 258 1.0000 1.0000 1.0000 0.0 7kv6:AAA, 7kv7:AAA
2 4aqo:A 86 62 0.0814 0.2442 0.3387 0.007
3 5eb8:A 354 41 0.0543 0.0395 0.3415 1.2 5eb8:B, 5eba:A, 5efd:A, 5efd:B, 5eff:A, 5eff:B, 2f8q:A, 2f8q:B, 2fgl:A, 2fgl:B, 4qce:A, 4qce:B, 4qcf:A, 4qdm:A, 4qdm:B, 5xc0:A, 5xc0:B, 5xc1:A, 5xc1:B
4 7w3u:A 343 105 0.1085 0.0816 0.2667 1.4 7w3r:A, 7w3u:B, 7w3u:C
5 4l9d:B 81 65 0.0814 0.2593 0.3231 1.7
6 2aek:A 354 34 0.0465 0.0339 0.3529 2.1 2aek:B, 2ael:B, 2aet:B, 1jfg:B, 1kiz:B, 2ps4:A, 2ps4:B, 2ps5:B, 2ps7:A, 2ps7:B, 2ps8:B, 2q9y:B, 2q9z:B, 1yyq:B, 1yyr:A, 1yyr:B, 1yys:A, 1yys:B, 1yyt:A, 1yyt:B, 1yyu:A, 1yyu:B
7 4u7k:A 86 49 0.0543 0.1628 0.2857 3.2 4u7k:B, 4u7k:C, 4u7k:D, 4u7k:E, 4u7k:F, 4u7k:G, 4u7k:H
8 5z6o:A 282 65 0.0698 0.0638 0.2769 3.8
9 8k2m:A 559 50 0.0620 0.0286 0.3200 6.7
10 3zhm:A 79 63 0.0620 0.2025 0.2540 8.4
11 8bh8:A 523 27 0.0426 0.0210 0.4074 9.2 8bh9:A
12 1iay:A 419 47 0.0543 0.0334 0.2979 9.7 1iax:A, 1iax:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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