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BioLiP
>protein
VKNYETAVQFCWNHYKDQMDPIEKDWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERIIFETHQIHFANCSLVQP

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rwf:A 555 79 0.9873 0.1405 0.9873 8.42e-54 6v2e:A, 2xvt:C, 2xvt:F
2 6zho:A 577 69 0.2658 0.0364 0.3043 9.14e-08 8ax5:A, 8ax6:A, 8ax7:A, 6d1u:A, 6d1u:B, 6d1u:C, 3n7r:A, 3n7r:C, 3n7r:D, 3n7r:B, 3n7s:A, 3n7s:C, 3n7s:D, 3n7s:B, 7p0f:A, 7p0i:A, 4rwg:A, 4rwg:B, 4rwg:C, 5v6y:A, 5v6y:B, 5v6y:C, 5v6y:D, 6zis:A
3 7p01:A 572 65 0.2405 0.0332 0.2923 0.044 7p01:B, 7p07:A, 7p07:B
4 5e1z:B 169 66 0.2405 0.1124 0.2879 0.57 5e1x:A, 5e20:A
5 7mqa:LQ 830 46 0.1772 0.0169 0.3043 2.1 7mq8:LQ, 7mq9:LQ
6 6c8r:A 358 28 0.1519 0.0335 0.4286 2.4 6c8r:B, 6c8s:A, 6c8s:B
7 8oz0:J 687 38 0.1772 0.0204 0.3684 2.5 8pj2:y, 8pj3:y, 7qp7:y
8 7a09:C 633 38 0.1772 0.0221 0.3684 2.6 8xxn:3C, 6zon:C, 6zp4:C, 6zvj:C
9 8pj1:y 731 38 0.1772 0.0192 0.3684 2.6 6fec:2, 8pj4:y, 8pj5:y, 8pj6:y, 8ppl:Iy, 7qp6:y, 8rg0:y, 6w2s:2, 6w2t:2, 6ybw:y, 6zmw:y
10 6fv5:B 382 30 0.1519 0.0314 0.4000 3.8 7b2i:A, 6fv5:A, 7ov9:A, 7ovo:A, 7ovs:A, 7owz:A
11 8omr:B 382 30 0.1519 0.0314 0.4000 4.1 7nq4:B
12 6icz:L 454 20 0.1266 0.0220 0.5000 4.4 5xjc:L
13 8i0u:L 387 20 0.1266 0.0258 0.5000 4.5 8i0v:L
14 8i0w:L 419 20 0.1266 0.0239 0.5000 4.7 5yzg:L
15 7p09:F 520 14 0.0886 0.0135 0.5000 4.8 7ksl:C, 7ksl:E, 7p0m:F
16 8ojl:A 777 14 0.0886 0.0090 0.5000 4.9 9cc0:A, 9cc0:C, 9cc0:E, 9cc0:B, 9cc0:D, 9cc0:F, 9cc3:B, 9cc3:C, 9cc3:D, 9cc3:E, 7krz:A, 7krz:C, 7krz:B, 7krz:D, 7krz:E, 7krz:F, 7ksl:B, 7ksl:A, 7ksl:F, 7ksm:B, 7ksm:A, 7ksm:C, 7ksm:D, 7ksm:E, 7ksm:F, 7nfy:A, 7nfy:B, 7nfy:C, 7nfy:E, 7nfy:D, 7nfy:F, 7ng4:B, 7ng4:C, 7ng4:D, 7ng4:A, 7ng4:E, 7ng4:F, 7ng5:A, 7ng5:D, 7ng5:B, 7ng5:C, 7ng5:E, 7ng5:F, 7ngc:A, 7ngc:B, 7ngc:C, 7ngc:D, 7ngc:E, 7ngc:F, 7ngf:A, 7ngf:F, 7ngf:B, 7ngf:C, 7ngf:D, 7ngf:E, 7ngl:A, 7ngl:B, 7ngl:C, 7ngl:D, 7ngl:E, 7ngl:F, 7ngp:A, 7ngp:B, 7ngp:C, 7ngp:D, 7ngp:E, 7ngp:F, 7ngq:A, 7ngq:B, 7ngq:C, 7ngq:D, 7ngq:E, 7ngq:F, 8ojl:B, 8ojl:C, 8ojl:D, 8ojl:E, 8ojl:F, 8oka:A, 8oka:B, 8oka:C, 8oka:D, 8oka:E, 8oka:F, 8om7:A, 8om7:B, 8om7:C, 8om7:D, 8om7:E, 8om7:F, 8ovf:A, 8ovf:B, 8ovf:C, 8ovf:D, 8ovf:E, 8ovf:F, 7oxo:A, 7oxo:B, 7oxo:C, 7oxo:D, 7oxo:E, 7oxo:F, 7p09:A, 7p09:B, 7p09:D, 7p09:C, 7p09:E, 7p0b:A, 7p0b:B, 7p0b:C, 7p0b:D, 7p0b:E, 7p0b:F, 7p0m:A, 7p0m:B, 7p0m:C, 7p0m:D, 7p0m:E, 6wzv:A, 6wzv:B, 6x1m:A, 6x1m:B, 6x27:A, 6x27:B, 6x27:C, 6x27:D, 6x27:E, 6x27:F, 6x27:G, 6x27:H, 6x27:I, 6x27:J, 6x27:K, 6x27:L
17 7o64:A 173 53 0.1392 0.0636 0.2075 5.1 7o63:A, 7o65:A, 7o66:A, 7o67:A, 7o68:A, 7o69:A, 7o6a:A, 7o6c:A, 7o6d:A, 7owy:A, 1r03:A, 5z8s:A, 5z8u:A, 5z8u:B, 5z91:A
18 8quc:A 395 45 0.1772 0.0354 0.3111 6.4 8f1c:A, 8f1c:B, 8f1c:C, 8f1c:D, 8f1d:A, 8f1d:B, 8f1d:C, 8f1d:D, 7phi:C, 7phi:B, 7phi:D, 8quc:B, 8quc:D, 8quc:C, 8qud:A, 8qud:B, 8qud:C, 8qud:D
19 4cj1:A 544 11 0.0759 0.0110 0.5455 6.6 4cj0:A, 1clc:A
20 8zjf:B 510 35 0.1772 0.0275 0.4000 6.6 3v4p:B, 3v4p:D, 3v4v:B, 3v4v:D
21 8upi:A 510 31 0.1646 0.0255 0.4194 7.3
22 6mfv:A 641 25 0.1266 0.0156 0.4000 7.4 6mfv:B, 6mfv:C, 6mfv:D
23 7kgy:A 593 54 0.2025 0.0270 0.2963 8.3 7kgy:B, 7kgy:C, 7kgy:D
24 3jap:p 634 41 0.1646 0.0205 0.3171 8.4 6fyx:q, 6fyy:q
25 6gsn:q 675 41 0.1646 0.0193 0.3171 8.6 8cah:q, 8cas:q, 6gsm:q, 8s8e:p, 4uer:c, 6zce:q, 6zu9:q
26 6rfq:E 263 24 0.1266 0.0380 0.4167 9.6
27 3zs6:A 506 50 0.1646 0.0257 0.2600 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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