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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VKKAGPVQVLIVKHSFELDETALNRILLSEAVRDKEVVAVSVAGAFAKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF
SWRTTGIQIWSEIFLINKPDGKKVAVLLMDTQLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEET
FLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVAFDGKLKE
IDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYN
KKMEEICPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSK

The query sequence (length=387) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6b9e:B 387 387 1.0000 1.0000 1.0000 0.0 6b9d:A, 6b9d:B, 3q5e:E, 3q5e:G
2 7ol3:B 425 411 0.9948 0.9059 0.9367 0.0 6b9e:A, 6b9f:A, 6b9f:B, 6b9g:B, 6b9g:C, 6b9g:D, 6b9g:A, 4idn:A, 4idn:B, 4ido:A, 4ido:B, 4idp:A, 4idp:B, 4idp:C, 4idp:D, 4idq:A, 4idq:B, 4idq:C, 4idq:D, 7ol3:A, 3q5d:A, 3q5e:A, 3q5e:C, 3qnu:A, 3qof:A, 3qof:B, 3qof:C, 3qof:D, 6xjn:A
3 5vgr:A 408 406 0.6899 0.6544 0.6576 0.0 5vgr:B, 6xjo:A, 6xjo:B
4 3x1d:A 381 377 0.5323 0.5407 0.5464 1.86e-148
5 7e5a:B 471 368 0.2145 0.1762 0.2255 6.62e-09 7e5a:A
6 2d4h:B 284 242 0.1525 0.2077 0.2438 2.74e-06
7 8r1a:A 587 387 0.2274 0.1499 0.2274 4.18e-06 2b8w:A, 2b8w:B, 2b92:A, 2b92:B, 2bc9:A, 8cqb:A, 8cqb:B, 2d4h:A, 1f5n:A, 6loj:B, 8r1a:B, 8r1a:C, 8r1a:D, 8r1a:E, 8r1a:F
8 6vkj:A 305 318 0.1809 0.2295 0.2201 7.66e-06
9 6k1z:A 544 367 0.2093 0.1489 0.2207 4.50e-05
10 7ckf:A 256 178 0.1085 0.1641 0.2360 0.015 7ckf:B
11 7a62:C 393 112 0.0672 0.0662 0.2321 0.51 7a62:A, 7a62:B, 7a62:D, 8abx:A, 7ah4:A, 7ah4:B, 7ah5:A, 7ah5:B, 7ah6:A, 7ah6:B, 6azu:A, 6azu:B, 6azu:C, 6azu:D, 6azv:A, 6azv:B, 6azv:C, 6azv:D, 6azw:A, 6azw:B, 7b1o:A, 7b1o:B, 6cxu:A, 6cxu:B, 6cxv:A, 6cxv:B, 2d0t:A, 2d0t:B, 2d0u:A, 2d0u:B, 6dpq:A, 6dpq:B, 6dpr:A, 6dpr:B, 7e0o:A, 7e0o:B, 7e0p:A, 7e0p:B, 7e0q:A, 7e0q:B, 7e0s:A, 7e0s:B, 7e0t:A, 7e0t:B, 7e0u:A, 7e0u:B, 6e35:A, 6e35:B, 6e40:A, 6e40:B, 6e40:C, 6e40:D, 6e41:A, 6e41:B, 6e41:C, 6e41:D, 6e42:A, 6e42:B, 6e42:C, 6e42:D, 6e43:A, 6e43:B, 6e43:C, 6e43:D, 6e44:A, 6e44:B, 6e44:C, 6e44:D, 6e45:A, 6e45:B, 6e45:C, 6e45:D, 6e46:A, 6e46:B, 6e46:C, 6e46:D, 5ek2:A, 5ek2:B, 5ek3:A, 5ek3:B, 5ek4:A, 5ek4:B, 5etw:A, 5etw:B, 6f0a:A, 6f0a:C, 8fur:A, 8fur:B, 8fur:C, 8fur:D, 8i7l:A, 8i7l:B, 6kof:A, 6kof:B, 6kps:A, 6kps:B, 6kw7:A, 6kw7:B, 7m63:A, 7m63:B, 7m7d:A, 7m7d:B, 6mq6:A, 6mq6:B, 7nge:A, 7nge:B, 7nge:C, 7nge:D, 6o3i:A, 6o3i:B, 7p0n:A, 7p0n:B, 7p0n:C, 7p0n:D, 7p0r:A, 7p0r:B, 7p0r:C, 7p0r:D, 4pk5:A, 4pk5:B, 4pk6:A, 4pk6:B, 6pu7:A, 6pu7:B, 6pz1:A, 6pz1:B, 6r63:A, 6r63:B, 7rrb:A, 7rrb:B, 7rrc:A, 7rrc:B, 7rrd:A, 7rrd:B, 4u72:A, 4u72:B, 4u74:A, 4u74:B, 6ubp:A, 6ubp:B, 6v52:A, 6v52:B, 5whr:A, 5whr:B, 6wjy:A, 6wjy:B, 5wmu:A, 5wmu:B, 5wmv:A, 5wmv:B, 5wmw:A, 5wmw:B, 5wmx:A, 5wmx:B, 5wn8:A, 5wn8:B, 6wpe:A, 6wpe:B, 6x5y:A, 6x5y:B, 5xe1:A, 5xe1:B, 7yxt:A, 7yxt:B, 7yxt:C, 7yxt:D, 7z2l:A, 7z2l:B, 7z2l:D, 7z2l:C, 7zv3:A, 7zv3:B
12 6cqr:E 245 40 0.0310 0.0490 0.3000 2.0 6cql:E, 6cqn:E, 6cqq:E, 6cqq:J, 6cqr:J, 8trl:J, 8trl:H
13 4urs:A 162 38 0.0362 0.0864 0.3684 2.4 4urg:A, 4urs:B
14 1toa:A 277 89 0.0594 0.0830 0.2584 4.1 1toa:B
15 3r11:B 364 74 0.0620 0.0659 0.3243 6.0 3r0u:A, 3r10:A, 3r11:A, 3r1z:A, 3r1z:B
16 1n1z:A 537 120 0.0982 0.0708 0.3167 6.4 1n1b:A, 1n1b:B, 1n1z:B, 1n20:A, 1n20:B, 1n21:A, 1n22:A, 1n22:B, 1n23:A, 1n23:B, 1n24:A, 1n24:B
17 5xyi:B 219 60 0.0439 0.0776 0.2833 6.5
18 8xxm:3G 84 30 0.0310 0.1429 0.4000 6.8 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
19 5izm:B 495 48 0.0620 0.0485 0.5000 8.7 5izk:A, 5izm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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