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BioLiP
>protein
VIDYYLEKSKANKELNDKKRLATTDANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFLSEDLDIECEGKDIYKCGSNV
FWKW

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wgh:N 84 84 1.0000 1.0000 1.0000 1.01e-58
2 5zji:N 84 84 0.8452 0.8452 0.8452 9.58e-50
3 7yca:N 91 65 0.4167 0.3846 0.5385 4.94e-20
4 4f30:A 521 70 0.2500 0.0403 0.3000 0.55 8doc:A, 4f2z:A, 4f2z:E, 4f3a:A, 4f3d:A, 4f3d:B, 3fsn:A, 3fsn:B, 7k88:B, 7k89:A, 7k89:B, 7k8g:B, 7l0e:A, 7l0e:B, 4rsc:A, 4rsc:B, 4rse:A, 4rse:B, 4ryx:A, 4ryy:A, 4ryy:B, 4ryz:A, 4ryz:B, 5ul5:A, 5ul5:B, 5ulg:A, 5ulg:B, 4zhk:A, 4zhk:B
5 7msc:Y 68 36 0.1667 0.2059 0.3889 0.75 7f0d:Y, 7kgb:Y, 7msh:Y, 7msm:Y, 7msz:Y, 7mt2:Y, 7mt3:Y, 7mt7:Y, 7sfr:Y, 5v7q:Y, 5v93:Y
6 5kh0:A 363 85 0.3095 0.0716 0.3059 2.3 5kh0:B, 5kh0:C, 5kh0:D
7 4fjc:E 434 30 0.1548 0.0300 0.4333 3.2 3m99:A, 3mhh:A
8 3mhs:A 455 30 0.1548 0.0286 0.4333 3.3 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
9 7ujd:A 577 46 0.1905 0.0277 0.3478 7.6 7uih:A
10 7mq9:LM 2005 61 0.2381 0.0100 0.3279 8.0
11 7mqa:LM 2041 61 0.2381 0.0098 0.3279 8.0
12 6dzi:Z 64 24 0.1190 0.1562 0.4167 9.0 6dzp:Z, 8fr8:6, 8kab:Z, 5o60:Z, 5o61:Z, 7s0s:a, 8v9j:1, 8v9k:1, 8v9l:1, 8whx:2, 8why:2, 8wi7:2, 8wi8:2, 8wib:2, 8wic:2, 7xam:Z, 5xym:Y, 8xz3:Z, 7y41:Z, 5zeb:Z, 5zep:Z, 5zet:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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