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BioLiP
>protein
VIAMPSVRKYAREKGVDIGTGKNGRVLKEDIDAF

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1w85:J 34 34 1.0000 1.0000 1.0000 5.81e-19
2 8oqj:B 55 38 0.5294 0.3273 0.4737 2.48e-06
3 6s6b:J 475 23 0.3235 0.0232 0.4783 2.3 6s8b:J, 6s8e:J, 6s91:J, 6sh8:J, 6shb:J, 6sic:J
4 5csu:A 518 12 0.2647 0.0174 0.7500 2.4 5cps:A, 5cps:B, 5cpt:A, 5cpt:B, 5cq1:A, 5cq1:B, 5csu:B, 5csy:A, 5csy:B
5 7k78:E 98 33 0.3235 0.1122 0.3333 2.5 7on1:e, 7on1:a, 8ow0:e, 8ow0:a, 8ow1:e, 8ow1:a, 6uph:E
6 8t4j:A 552 13 0.2353 0.0145 0.6154 3.7 1jj7:A, 8t4e:A, 8t4f:A, 8t4g:A, 8t4h:A, 8t4i:A
7 3myu:B 334 26 0.2647 0.0269 0.3462 4.5 3myu:A
8 5l2v:A 166 20 0.2353 0.0482 0.4000 5.1 5l2v:B
9 4zda:A 735 29 0.3235 0.0150 0.3793 5.4 4zda:B, 4zda:C, 4zda:D, 4zda:E, 4zda:F
10 1of6:A 350 19 0.2941 0.0286 0.5263 6.7 1hfb:A, 1hfb:B, 1hfb:C, 1hfb:D, 1hfb:E, 1hfb:F, 1hfb:G, 1hfb:H, 1oab:A, 1oab:B, 1of6:B, 1of6:C, 1of6:D, 1of6:E, 1of6:F, 1of6:G, 1of6:H, 1of8:A, 1of8:B, 1ofa:B, 1ofa:A, 1ofb:A, 1ofb:B, 1ofo:A, 1ofo:B, 1ofq:A, 1ofq:B, 1ofq:C, 1ofq:D, 1ofr:A, 1ofr:H, 1ofr:C, 1ofr:D, 1ofr:E, 1ofr:F, 1ofr:G, 1ofr:B, 1og0:A, 1og0:B, 1og0:C, 1og0:D, 1og0:E, 1og0:F, 1og0:G, 1og0:H
11 7o84:A 410 22 0.2647 0.0220 0.4091 7.0 7o84:B
12 2eco:A 302 24 0.2941 0.0331 0.4167 7.2 2ecq:A, 2efy:A, 2efy:B, 1ve1:A
13 1z41:A 337 26 0.2647 0.0267 0.3462 7.8 1z41:B, 1z42:A, 1z42:B, 1z44:A, 1z44:B, 1z48:A, 1z48:B
14 4jro:C 247 32 0.3235 0.0445 0.3438 9.5 4jro:B, 4jro:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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