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BioLiP
>protein
VEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTY
KFYCSPHQGAGMVGQVTVN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yez:P 99 99 1.0000 1.0000 1.0000 4.22e-69 6zoo:P
2 9pcy:A 99 99 0.8182 0.8182 0.8182 2.31e-56
3 1ag6:A 99 99 0.8081 0.8081 0.8081 7.82e-56 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
4 1byo:A 99 98 0.7879 0.7879 0.7959 1.45e-55 1byo:B, 1byp:A
5 1jxg:A 100 99 0.7576 0.7500 0.7576 2.25e-51 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
6 4dp0:X 99 99 0.7576 0.7576 0.7576 6.99e-51 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
7 1pla:A 97 98 0.7071 0.7216 0.7143 2.75e-46 1plb:A
8 2plt:A 98 96 0.6263 0.6327 0.6458 7.62e-41 7zqe:M
9 7pcy:A 98 96 0.5859 0.5918 0.6042 8.63e-35
10 1iuz:A 98 97 0.5859 0.5918 0.5979 1.90e-34
11 1b3i:A 97 98 0.4545 0.4639 0.4592 2.70e-23 2b3i:A, 2jxm:A
12 1bxu:A 91 99 0.4040 0.4396 0.4040 1.55e-22 1bxv:A
13 4r0o:A 106 99 0.3838 0.3585 0.3838 6.28e-22 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
14 2gim:A 106 99 0.4444 0.4151 0.4444 2.06e-21 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
15 1j5c:A 98 98 0.4141 0.4184 0.4184 5.18e-21 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
16 2bz7:A 102 104 0.4444 0.4314 0.4231 2.46e-18 2bzc:A, 1kdi:A, 1kdj:A
17 6akn:A 124 99 0.3838 0.3065 0.3838 2.46e-11 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
18 3tu6:A 127 100 0.3232 0.2520 0.3200 1.04e-07
19 3c75:A 106 87 0.2525 0.2358 0.2874 5.34e-07 3c75:B, 1id2:A, 1id2:B, 1id2:C
20 8k9n:A 125 102 0.2727 0.2160 0.2647 6.13e-06 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
21 1adw:A 123 98 0.2929 0.2358 0.2959 8.42e-06 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
22 1pmy:A 123 99 0.3131 0.2520 0.3131 9.65e-06
23 5fc9:A 95 85 0.2626 0.2737 0.3059 2.54e-05 5fc9:B, 5fc9:C, 5fc9:D
24 1aac:A 105 81 0.2626 0.2476 0.3210 7.79e-05 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
25 5b1j:C 124 87 0.2828 0.2258 0.3218 0.001 3ef4:A, 3ef4:B, 3ef4:C
26 6hbe:C 427 83 0.2626 0.0609 0.3133 0.10 6hbe:A, 6hbe:B
27 2aan:A 123 125 0.3939 0.3171 0.3120 0.30
28 5e02:A 964 66 0.2121 0.0218 0.3182 0.42
29 4hcf:B 96 87 0.2323 0.2396 0.2644 0.43 4hcf:A, 4hcg:A, 4hcg:B
30 3pgs:A 427 57 0.1717 0.0398 0.2982 0.44 3pf1:A, 3pf1:B, 3pgs:B, 3pgu:A, 1t16:A, 1t16:B
31 2zsg:A 356 23 0.1212 0.0337 0.5217 0.62
32 7w7g:B 1711 54 0.1717 0.0099 0.3148 2.2
33 7syv:x 627 52 0.1717 0.0271 0.3269 3.9 8pj3:0, 8pj4:0, 8pj5:0, 7syw:x, 7syx:x, 7tql:1, 4ujc:AB, 4ujd:BB
34 5c2v:B 352 53 0.1717 0.0483 0.3208 6.2 5c2v:E, 5c2w:B, 5c2w:E
35 6zyz:A 259 47 0.1515 0.0579 0.3191 7.1 6zyz:B, 6zyz:C, 6zyz:D, 6zzt:C
36 7n4y:B 2455 75 0.1818 0.0073 0.2400 8.2 7n4y:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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