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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERI
VYFKNKEHCYASVRNVKK

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3bs1:A 103 98 1.0000 0.9515 1.0000 1.29e-68 4xqj:A, 4xqj:D, 4xqn:A, 4xqn:J, 4xqn:D, 4xqn:G, 4xqq:B, 4xxe:A, 4xxe:D, 4xyq:A
2 4coy:A 232 42 0.1735 0.0733 0.4048 0.66 4cou:A, 4cov:A, 4cow:A, 4coz:A
3 5a7v:A 368 41 0.1327 0.0353 0.3171 0.94 5a7v:B
4 4f03:A 251 38 0.1224 0.0478 0.3158 0.95 4f03:B, 4f03:C, 4g19:A, 4g19:B, 4g19:C, 4g19:D
5 6e60:A 538 28 0.0918 0.0167 0.3214 3.3 6dmf:A, 6dmf:B, 6dmf:C, 6dmf:D, 6dmf:E, 6dmf:F, 6dmf:G, 6dmf:H, 6dmf:I, 6dmf:J, 6e61:A, 6e61:B, 7nox:A, 7nox:B
6 5csl:B 2072 22 0.1122 0.0053 0.5000 4.3 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
7 5csl:A 2050 22 0.1122 0.0054 0.5000 4.5
8 7auk:A 168 65 0.2041 0.1190 0.3077 4.9 7aui:A, 7auj:A, 7aul:A, 7aum:A, 7aun:A, 7aup:A, 7aus:A
9 6d4g:B 187 31 0.1020 0.0535 0.3226 6.3
10 7eqh:A 212 18 0.1122 0.0519 0.6111 9.4 7eqh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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