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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTVPAHNLSDAFGEKFGKDARKVTGMNNLS
CMEIDPSAALKDMALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFI
SGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAECKRCQARWKMQKKY
LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xtr:B 311 309 0.9966 0.9421 0.9482 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
2 3sja:A 338 336 0.9966 0.8669 0.8720 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3sjd:C 292 300 0.9626 0.9692 0.9433 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
4 3a36:A 314 320 0.9694 0.9076 0.8906 0.0 3a37:A, 5bwk:N
5 3idq:A 272 291 0.8878 0.9596 0.8969 0.0
6 3io3:A 230 293 0.5612 0.7174 0.5631 4.15e-105
7 3ibg:A 300 307 0.5714 0.5600 0.5472 4.74e-104 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
8 2woo:A 303 307 0.5816 0.5644 0.5570 4.11e-102 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
9 8odu:A 291 297 0.5442 0.5498 0.5387 8.25e-98
10 3iqx:A 261 287 0.5238 0.5900 0.5366 1.48e-91 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 321 0.5102 0.4792 0.4673 1.17e-83 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 306 0.4830 0.4641 0.4641 1.16e-78 7sq0:B
13 7spz:A 328 324 0.4898 0.4390 0.4444 9.91e-76 7spy:A
14 8hac:B 327 330 0.4864 0.4373 0.4333 6.53e-72 8hac:A
15 3zq6:B 288 282 0.3707 0.3785 0.3865 4.65e-46 3zq6:C
16 3zq6:D 307 302 0.3605 0.3453 0.3510 1.90e-42 3zq6:A
17 3ug7:A 317 289 0.3129 0.2902 0.3183 1.32e-40 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 5zme:A 638 290 0.2891 0.1332 0.2931 2.78e-26 5zmf:A
19 5zme:A 638 340 0.3129 0.1442 0.2706 1.20e-22 5zmf:A
20 1ii0:B 553 259 0.2721 0.1447 0.3089 9.45e-25 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
21 1ii0:B 553 294 0.2483 0.1320 0.2483 3.81e-05 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
22 6bs3:A 330 224 0.1701 0.1515 0.2232 8.15e-06 6bs4:A, 6bs5:A
23 8elf:B 384 198 0.1667 0.1276 0.2475 2.25e-04 8elf:A
24 8egk:B 355 58 0.0646 0.0535 0.3276 0.017
25 5if9:A 251 179 0.1803 0.2112 0.2961 0.027 5if9:B, 5ihp:A, 5ihp:B
26 3q9l:A 257 34 0.0578 0.0661 0.5000 0.073 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
27 6iub:A 264 42 0.0578 0.0644 0.4048 0.14 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
28 5u1g:D 211 92 0.1054 0.1469 0.3370 0.28 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
29 9bhw:B 299 194 0.1361 0.1338 0.2062 0.31 9bhw:C
30 6riq:C 254 25 0.0442 0.0512 0.5200 0.44 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
31 4v02:A 244 48 0.0646 0.0779 0.3958 0.46 4v02:B, 4v03:A, 4v03:B
32 2ynm:B 268 41 0.0578 0.0634 0.4146 0.46 2ynm:A
33 1w4r:A 174 97 0.0850 0.1437 0.2577 0.73 2orv:A, 2orv:B, 1w4r:B, 1w4r:C, 1w4r:D, 1w4r:E, 1w4r:F, 1w4r:G, 1w4r:H, 2wvj:A, 2wvj:B, 2wvj:C, 2wvj:D, 2wvj:E, 2wvj:F, 2wvj:G, 2wvj:H, 1xbt:A, 1xbt:B, 1xbt:C, 1xbt:D, 1xbt:E, 1xbt:F, 1xbt:G, 1xbt:H
34 2bej:A 245 44 0.0544 0.0653 0.3636 0.86 2bek:A, 2bek:B, 2bek:C, 2bek:D
35 6bs3:B 355 176 0.1224 0.1014 0.2045 1.1 6bs4:B
36 5tvk:B 242 56 0.0680 0.0826 0.3571 1.3 3k9g:A, 5tvk:A
37 5k5z:D 314 138 0.1293 0.1210 0.2754 1.9 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
38 3fwy:A 268 43 0.0578 0.0634 0.3953 2.2 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
39 1fw1:A 208 56 0.0578 0.0817 0.3036 2.5
40 6a20:A 395 180 0.1361 0.1013 0.2222 3.6 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
41 3ixe:B 70 26 0.0340 0.1429 0.3846 3.7
42 1k9y:A 354 31 0.0442 0.0367 0.4194 5.6 1k9z:A, 1ka0:A, 1ka1:A, 1qgx:A
43 8r9r:A 255 63 0.0646 0.0745 0.3016 6.1
44 8oie:D 272 85 0.0680 0.0735 0.2353 6.7 8oie:E, 8oie:I, 8oie:J
45 6hk9:B 78 53 0.0476 0.1795 0.2642 7.3 6hk9:A
46 3kb1:A 243 57 0.0646 0.0782 0.3333 7.5 3kb1:B, 6oby:A, 6oby:B
47 5e7p:A 719 28 0.0408 0.0167 0.4286 8.1 5e7p:B
48 2k2r:A 129 58 0.0646 0.1473 0.3276 8.2 2vzd:A, 2vzd:B, 2vzg:B, 2vzi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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