Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VDRSHFSLRDFFRGISANFELGKDFLREMNTPIHVSEAVFLPLSLCTLSPGRCLRLSPFGHSLTLGSHCEICINRSQVHV
PQEFSSTQLSFFNNVHKIIPNKTFYVSLLSSSPSAVKAGLSQPSLLYAYLVTGHFCGTICPIFSTNGKGRLIMHLLLQGT
SLHIPETCLKLLCENIGPTYELAVDLVGDAFCIKVSPRDTVYEKAVNVDEDAIYEAIKDLECGDELRLQIINYTQLILEN
KQ

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7t7i:D 242 242 1.0000 1.0000 1.0000 0.0 7t7i:B, 7t7i:H, 7t7i:J
2 7t7i:F 208 239 0.8595 1.0000 0.8703 5.36e-139
3 5dob:A 237 220 0.2190 0.2236 0.2409 6.71e-13 5d5n:B, 5doc:A, 5doc:B, 5doe:B
4 7pab:A 415 146 0.1446 0.0843 0.2397 7.12e-06 7pab:C
5 8g6d:B 253 148 0.1446 0.1383 0.2365 0.001 8g6d:D, 8g6d:F, 8g6d:H, 8g6d:J, 8g6d:L, 4zxs:B, 4zxs:D
6 4z3u:B 252 152 0.1570 0.1508 0.2500 0.001 5e8c:A, 5fki:1A, 5fki:1C, 5fki:1E, 5fki:1G, 5fki:1I, 5fki:1K, 5fki:1M, 5fki:1O, 5fki:1Q, 5fki:1S, 5fki:1U, 5fki:1W, 5fki:1Y, 5fki:10, 5fki:12, 5fki:14, 5fki:16, 5fki:18, 5fki:2A, 5fki:2C, 5fki:2E, 5fki:2G, 5fki:2I, 5fki:2K, 5fki:2M, 5fki:2O, 5fki:2Q, 5fki:2S, 5fki:2U, 5fki:2W, 5fki:2Y, 5fki:20, 5fki:22, 5fki:24, 5fki:26, 5fki:28, 5fki:3A, 5fki:3C, 5fki:3E, 5fki:3G, 5fki:3I, 5fki:3K, 4z3u:D
7 7dn1:B 280 34 0.0496 0.0429 0.3529 0.68 7dll:A, 7dll:B, 7dmg:A, 7dmg:B
8 8b6f:AL 218 54 0.0661 0.0734 0.2963 3.4 8bqs:AL, 8gym:s8, 8gym:S8, 8gzu:s8, 8gzu:S8, 7tgh:S8
9 7tby:A 1788 126 0.1157 0.0157 0.2222 3.8 7tc0:A
10 8dh1:L 702 35 0.0537 0.0185 0.3714 6.1
11 7dlm:A 280 34 0.0537 0.0464 0.3824 6.1 7dlm:B, 7dn1:A, 7vyq:A, 7vyq:B, 7vyq:F, 7vyq:G
12 5zxd:A 464 47 0.0661 0.0345 0.3404 9.3
13 7y7q:B 906 37 0.0455 0.0121 0.2973 9.4
14 7y7q:A 951 37 0.0455 0.0116 0.2973 9.5 2j7n:A, 2j7n:B, 2j7o:A, 7y7p:A, 7y7p:B, 7y7r:A, 7y7r:B, 7y7s:A, 7y7s:B, 7y7t:A, 7y7t:B
15 5zxd:B 491 47 0.0661 0.0326 0.3404 9.9

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218