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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VDAELLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPAWADRLDEDDIEAVSN
YVYDQAVNSKW

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ls9:A 91 91 1.0000 1.0000 1.0000 1.45e-62
2 1c6o:A 89 86 0.6154 0.6292 0.6512 3.97e-38 1c6o:B, 1c6r:A
3 1cyj:A 90 86 0.5934 0.6000 0.6279 4.87e-38 1cyi:A
4 1a2s:A 89 86 0.6154 0.6292 0.6512 2.59e-37 1ced:A, 1ctj:A
5 1c6s:A 87 81 0.5165 0.5402 0.5802 1.08e-27 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
6 1gdv:A 85 81 0.4945 0.5294 0.5556 3.70e-26
7 3dr0:A 93 81 0.4945 0.4839 0.5556 6.73e-25 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
8 7y5e:GN 84 82 0.4615 0.5000 0.5122 3.27e-24 7y5e:G2, 7y7a:G7, 7y7a:Go
9 3ph2:B 85 81 0.5055 0.5412 0.5679 7.81e-24 2v08:A, 2v08:B
10 2zbo:A 86 78 0.4286 0.4535 0.5000 7.56e-23 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
11 1kib:A 89 83 0.4615 0.4719 0.5060 1.84e-22 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
12 3dmi:A 87 78 0.4066 0.4253 0.4744 2.73e-22
13 4gyd:A 86 79 0.4615 0.4884 0.5316 8.42e-21 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
14 4eie:A 82 79 0.3846 0.4268 0.4430 2.28e-16 4eif:A
15 7o38:A 81 76 0.2857 0.3210 0.3421 2.23e-09
16 4kmg:A 88 86 0.2857 0.2955 0.3023 4.24e-08
17 5djq:C 303 80 0.2637 0.0792 0.3000 2.17e-05 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
18 5djq:C 303 82 0.2637 0.0792 0.2927 0.005 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
19 3dp5:A 99 75 0.2418 0.2222 0.2933 6.97e-05 3cu4:A, 5mcs:A, 6u97:A
20 7o9u:A 153 92 0.3297 0.1961 0.3261 8.88e-05
21 8smr:G 312 85 0.2747 0.0801 0.2941 0.001
22 8smr:G 312 78 0.2527 0.0737 0.2949 0.009
23 2dge:A 102 94 0.2747 0.2451 0.2660 0.007 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
24 8hdd:B 121 90 0.2418 0.1818 0.2444 0.011
25 6f0k:E 182 92 0.2637 0.1319 0.2609 0.016
26 8snh:G 304 82 0.2747 0.0822 0.3049 0.019
27 8snh:G 304 83 0.2308 0.0691 0.2530 0.020
28 2zon:G 81 79 0.2857 0.3210 0.3291 0.020
29 6hwh:i 162 85 0.2857 0.1605 0.3059 0.027 6hwh:j
30 6hwh:i 162 83 0.2527 0.1420 0.2771 2.5 6hwh:j
31 4yuu:V1 129 24 0.1099 0.0775 0.4167 0.029 4yuu:v1, 4yuu:V2, 4yuu:v2
32 6adq:C 223 85 0.2747 0.1121 0.2941 0.036 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
33 6adq:C 223 83 0.2527 0.1031 0.2771 3.4 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
34 2zoo:A 438 94 0.2747 0.0571 0.2660 0.062
35 4lji:A 133 21 0.1099 0.0752 0.4762 0.095 4lji:B
36 6jlu:V 137 24 0.1099 0.0730 0.4167 0.096 8iwh:V, 8iwh:v, 6j3y:V, 6j3y:v, 6j3z:V, 6j3z:v, 6j40:V, 6j40:v, 8j5k:V, 8j5k:v, 6jlu:v, 7vd5:V, 7vd5:v
37 1gks:A 78 79 0.2308 0.2692 0.2658 0.096
38 7e1w:O 223 90 0.2857 0.1166 0.2889 0.10 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
39 6xkw:p 254 76 0.2527 0.0906 0.3026 0.10 6xkx:p, 6xkz:p
40 3a0b:V 137 43 0.1648 0.1095 0.3488 0.15 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
41 8xr6:V 137 39 0.1319 0.0876 0.3077 0.15 8wb4:V, 8wb4:v, 8xr6:v
42 1e29:A 135 30 0.1319 0.0889 0.4000 0.28 7n8o:V, 7n8o:v, 7rcv:V, 7rcv:v, 8tow:V, 8tow:v
43 6cin:B 1169 68 0.2308 0.0180 0.3088 0.45 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
44 7y5e:VL 134 24 0.1099 0.0746 0.4167 0.50 7y5e:V6, 7y5e:v6, 7y5e:vL, 7y7a:V9, 7y7a:v9, 7y7a:VE, 7y7a:vE, 7y7a:VO, 7y7a:vO, 7y7a:VZ, 7y7a:vZ, 7y7a:Vm, 7y7a:vm
45 2gc4:D 147 20 0.0879 0.0544 0.4000 0.60 2gc4:H, 2gc4:L, 2gc4:P, 2gc7:D, 2gc7:H, 2gc7:L, 2gc7:P, 1mg2:D, 1mg2:H, 1mg2:L, 1mg2:P, 1mg3:D, 1mg3:H, 1mg3:L, 1mg3:P, 2mta:C
46 2yev:B 319 13 0.0989 0.0282 0.6923 1.6 2yev:E
47 5mxy:A 83 77 0.1978 0.2169 0.2338 1.8 5mxz:A
48 8hn3:A 80 16 0.0879 0.1000 0.5000 1.8 8hn3:B
49 2zzs:A 81 65 0.1978 0.2222 0.2769 2.1 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
50 8eqm:V 131 21 0.1099 0.0763 0.4762 2.4 8eqm:v
51 3cp5:A 116 21 0.0989 0.0776 0.4286 2.4 6cuk:A, 6cun:A
52 2l4d:A 106 18 0.0769 0.0660 0.3889 2.5
53 4ax3:D 457 15 0.0879 0.0175 0.5333 2.8 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
54 8a82:A 354 56 0.1758 0.0452 0.2857 2.8
55 1cyc:A 103 26 0.1319 0.1165 0.4615 2.9 1cyc:B, 3cyt:O, 3cyt:I, 5cyt:R, 1i54:A, 1i54:B, 1i55:A, 1i55:B, 1lfm:A, 1lfm:B
56 8sy3:A 209 29 0.1209 0.0526 0.3793 3.2 8sy3:B
57 2xts:D 204 16 0.0989 0.0441 0.5625 3.3 2xts:B
58 5lo9:A 471 73 0.2418 0.0467 0.3014 3.5 5lo9:B
59 8wql:VD 135 31 0.1209 0.0815 0.3548 4.2 1f1c:A, 1f1c:B, 8wql:VE, 8wql:V1, 8wql:v1, 8wql:vD, 8wql:vE
60 7vzg:C 193 18 0.0769 0.0363 0.3889 5.2 7vzr:C
61 8uf3:A 187 22 0.1319 0.0642 0.5455 6.0 8uf3:B
62 1akk:A 104 16 0.0879 0.0769 0.5000 6.1 2b4z:A, 5c0z:A, 5c0z:D, 5c0z:B, 5c0z:C, 5c9m:A, 5c9m:D, 5c9m:B, 5c9m:C, 1crc:A, 1crc:B, 5df5:A, 5df5:B, 5df5:C, 5df5:D, 8dvx:A, 8dvx:D, 8dvx:B, 8dvx:C, 8dzl:A, 8dzl:B, 8dzl:C, 8dzl:D, 6ff5:A, 1fi7:A, 1fi9:A, 2frc:A, 1giw:A, 2giw:A, 1hrc:A, 1i5t:A, 5iy5:1, 5iy5:2, 3j2t:H, 3j2t:I, 3j2t:J, 3j2t:K, 3j2t:L, 3j2t:M, 3j2t:N, 3jbt:B, 3jbt:D, 3jbt:F, 3jbt:H, 3jbt:J, 3jbt:L, 3jbt:N, 5juy:H, 5juy:I, 5juy:J, 5juy:K, 5juy:L, 5juy:M, 5juy:N, 6k9i:A, 6k9j:A, 1lc1:A, 1lc2:A, 7ljx:A, 7ljx:B, 1m60:A, 6n1o:A, 6n1o:B, 6n1o:C, 6n1o:D, 2n3b:A, 3nbs:A, 3nbs:B, 3nbs:C, 3nbs:D, 3nbt:A, 3nbt:E, 3nbt:B, 3nbt:C, 3nbt:D, 3nbt:F, 4nfg:B, 3o1y:A, 3o1y:B, 3o1y:C, 3o20:A, 3o20:B, 3o20:C, 1ocd:A, 2pcb:B, 4rsz:A, 4rsz:B, 4rsz:C, 4rsz:D, 4rsz:E, 4rsz:F, 6suv:AaA, 6suv:BaB, 6suv:CaC, 6suv:DaD, 6suv:EaE, 6suv:FaF, 6suv:GaG, 6suv:HaH, 1u75:B, 3wc8:A, 1wej:F, 3wui:A, 5wve:B, 5wve:D, 5wve:F, 5wve:H, 5wve:J, 5wve:L, 5wve:N, 2ybb:Y, 5zkv:A
63 6h5l:B 220 21 0.0879 0.0364 0.3810 6.3
64 2aiu:A 104 13 0.0879 0.0769 0.6154 6.6
65 2c8s:A 149 20 0.0879 0.0537 0.4000 7.0
66 5mo4:A 429 26 0.1099 0.0233 0.3846 9.0 3cs9:B, 3cs9:C, 2hz0:B, 6npe:B, 6npu:B, 6npv:B, 3pyy:B, 8ssn:A
67 7mq8:LS 453 51 0.1429 0.0287 0.2549 9.5 7mq9:LS, 7mqa:LS
68 7jfz:A 547 50 0.1648 0.0274 0.3000 9.6
69 4dy9:A 108 23 0.1209 0.1019 0.4783 9.9 4ged:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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