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BioLiP
>protein
VCPYLEETFKILGRSWNGLIINYLSRSNDSSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIISTSPVQIIYVLTE
KGKALAEALHPIEAWAQSY

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hqe:B 108 99 0.9798 0.8981 0.9798 8.90e-69 4hqe:A, 4hqm:A, 4hqm:B
2 2bcg:G 442 26 0.1414 0.0317 0.5385 0.11 1ukv:G
3 8t4m:D 533 67 0.2222 0.0413 0.3284 0.21 9bc6:D, 9bc6:A, 9bc6:B, 9bc6:C, 9bc7:A, 9bc7:B, 9bc7:C, 9bc7:D, 3bpz:A, 3bpz:B, 3bpz:C, 3bpz:D, 5khg:A, 5khh:A, 5khi:A, 5khj:A, 5khj:B, 5khk:A, 2q0a:A, 2q0a:B, 1q3e:A, 1q3e:B, 1q43:A, 1q43:B, 1q5o:A, 8t4m:C, 8t4m:B, 8t4m:A, 8t4y:A, 8t4y:D, 8t4y:C, 8t4y:B, 3u0z:A, 3u0z:B, 3u10:A, 5u6p:A, 5u6p:B, 5u6p:C, 5u6p:D, 8uc7:D, 8uc7:A, 8uc7:B, 8uc7:C, 6uqf:A, 6uqf:B, 6uqf:C, 6uqf:D, 6uqg:A, 6uqg:B, 6uqg:C, 6uqg:D
4 8t50:C 474 35 0.1414 0.0295 0.4000 0.22 8t50:B, 8t50:A, 8t50:D
5 2f2e:B 140 102 0.2525 0.1786 0.2451 0.42
6 4krc:A 297 29 0.1111 0.0370 0.3793 0.45 2pmi:A
7 4xrf:A 142 44 0.1515 0.1056 0.3409 3.1
8 7ou2:A 721 90 0.2525 0.0347 0.2778 3.1 5akb:E, 7oto:B, 7oto:A, 7ou0:B, 7ou0:A, 7ou4:A, 7ou4:B
9 3asz:B 208 37 0.1313 0.0625 0.3514 4.8 3asz:A, 3w34:A, 3w34:B, 3w8r:A, 3w8r:B
10 4i2w:A 904 58 0.1717 0.0188 0.2931 7.0 4i2z:A
11 8iew:A 498 67 0.1919 0.0382 0.2836 9.2 8inb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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