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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VALSFHDLHQLTRAAVERAQQLQVPVVVSIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELSDVVQPGAA
LYGLESHLQGKVVTFGGGYALWRDGILIGGLGISGGSVEQDMDIAQTAIAAINVGTHQ

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cx7:E 139 138 1.0000 0.9928 1.0000 2.65e-97 5cx7:A, 5cx7:B, 5cx7:C, 5cx7:D, 5cx7:F, 5cx7:G, 5cx7:H, 5cx7:I, 5cx7:J, 5cx7:K, 5cx7:L, 5cx7:M, 5cx7:N, 5cx7:O, 5cx7:P
2 6c0z:A 137 121 0.3333 0.3358 0.3802 1.80e-15 6c0z:C, 6c0z:D
3 3fpv:A 141 98 0.2174 0.2128 0.3061 0.004 3fpv:B, 3fpv:C, 3fpv:D, 3fpv:E, 3fpv:G, 3fpv:F, 3fpv:H
4 3lpp:B 869 56 0.1087 0.0173 0.2679 0.50 3lpp:D
5 8gm4:A 462 43 0.1014 0.0303 0.3256 1.4
6 8fny:A 497 41 0.0942 0.0262 0.3171 4.6 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
7 6w3o:B 252 72 0.1594 0.0873 0.3056 6.1 6w3o:A, 6w3p:A, 6w3p:B, 6w3r:A, 6w3r:B, 6w3s:A, 6w3s:B, 6w3t:A, 6w3t:B, 6w3v:A, 6w3v:B, 6w3x:A, 6w3x:B, 6w3y:A, 6w3y:B, 4xmr:A, 4xmr:B
8 1lbg:A 357 36 0.1087 0.0420 0.4167 7.2 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
9 6z7p:A 1025 50 0.1232 0.0166 0.3400 8.3 8bqe:B, 8bqe:C, 8bqe:E, 8bqe:D, 8bqe:F, 8bqe:A, 5n8p:A, 5n8p:B, 5n8p:C, 5n8p:D, 5n8p:E, 5n8p:F, 5n97:A, 5n97:B, 5n97:C, 5n97:D, 5n97:E, 5n97:F, 7peo:A, 6t72:A
10 4pyt:A 302 42 0.1232 0.0563 0.4048 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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