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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VAARGGELTQSTHLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPTS
ELAKRLAQAPTLKDIPGTLFLAGGTPVTAKGAPVAGIGVAGAPSGDLDEQYARAGAAVLGH

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fpv:A 141 141 1.0000 1.0000 1.0000 1.31e-97 3fpv:B, 3fpv:C, 3fpv:D, 3fpv:E, 3fpv:G, 3fpv:F, 3fpv:H
2 6c0z:A 137 134 0.3262 0.3358 0.3433 3.02e-10 6c0z:C, 6c0z:D
3 5cx7:E 139 70 0.1915 0.1942 0.3857 2.56e-04 5cx7:A, 5cx7:B, 5cx7:C, 5cx7:D, 5cx7:F, 5cx7:G, 5cx7:H, 5cx7:I, 5cx7:J, 5cx7:K, 5cx7:L, 5cx7:M, 5cx7:N, 5cx7:O, 5cx7:P
4 5ftx:A 651 27 0.0780 0.0169 0.4074 2.0 5fty:A, 5fty:B, 4uie:A, 4uj7:A, 4uj8:A, 4uj8:B, 4uj8:C, 4uj8:D
5 1p17:B 204 29 0.0851 0.0588 0.4138 4.0 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
6 6nun:A 516 49 0.1135 0.0310 0.3265 4.1
7 7sbb:I 680 34 0.0851 0.0176 0.3529 4.1
8 5t99:A 757 68 0.1348 0.0251 0.2794 5.0 5t99:B
9 3r7k:A 378 43 0.0851 0.0317 0.2791 5.0 3r7k:B, 3r7k:C, 3r7k:D
10 7me2:A 281 27 0.0709 0.0356 0.3704 6.9 7me1:A, 7me1:B, 7me2:B, 7me3:A, 7me3:B, 6q1d:A, 5uxs:A, 5uxu:A, 5uy0:A, 5uy4:A, 5uy5:A, 5uya:A, 5uyb:A, 5uyc:A, 5uyd:A, 5uye:A, 5uyf:A, 5uyg:A, 5uyh:A, 5uyv:A, 5uyw:A
11 5swi:B 693 35 0.0922 0.0188 0.3714 9.4 5swi:A, 5swi:C, 5swi:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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