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BioLiP
>protein
TWLPTLVTATPQEGFDLAVKLSRIAVKKTQPDAQVRDTLRAVYEKDANALIAVSAVVATHFQTIAAANDYW

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2oyy:A 71 71 1.0000 1.0000 1.0000 6.67e-47 2oyy:B, 2oyy:C, 2oyy:D, 2oyy:F, 2oyy:E, 2oyy:H, 2oyy:G
2 5xyi:X 140 52 0.2113 0.1071 0.2885 0.13
3 3uly:A 389 59 0.2958 0.0540 0.3559 0.32 3um0:A, 3um1:A, 3um1:D, 3um2:A, 3um2:D, 3um3:A
4 3qc5:X 352 39 0.1831 0.0369 0.3333 0.77 6ef7:A, 6efa:A, 5iuc:A, 5iuc:B, 3qc6:X
5 4qi6:A 800 59 0.2958 0.0262 0.3559 1.9 4qi3:A, 4qi3:B, 4qi4:A, 4qi5:A
6 5weo:A 988 33 0.1690 0.0121 0.3636 2.4 6dlz:A, 6dlz:D, 6dlz:B, 6dlz:C, 6dm0:A, 6dm0:D, 6dm0:B, 6dm0:C, 6dm1:A, 6dm1:D, 6dm1:B, 6dm1:C, 6o9g:A, 6o9g:D, 6o9g:B, 6o9g:C, 7ocf:A, 7ocf:C, 7tnj:A, 7tnj:B, 7tnj:C, 7tnj:D, 7tnk:A, 7tnk:D, 7tnk:B, 7tnk:C, 7tnl:A, 7tnl:D, 7tnl:B, 7tnl:C, 7tnm:A, 7tnm:D, 7tnm:B, 7tnm:C, 7tnn:A, 7tnn:D, 7tnn:B, 7tnn:C, 7tno:A, 7tno:D, 7tno:B, 7tno:C, 7tnp:A, 7tnp:D, 7tnp:B, 7tnp:C, 5weo:D, 5weo:B, 5weo:C
7 3crl:B 383 75 0.2535 0.0470 0.2400 3.8 2bu2:A, 2bu5:A, 2bu6:A, 2bu7:A, 2bu8:A, 3crk:A, 3crk:B, 3crl:A, 7ea0:A, 7eas:A, 7ebh:A, 5j6a:A, 1jm6:A, 1jm6:B, 6lil:A, 6lil:B, 6lin:A, 6lin:B, 6lin:C, 6lin:D, 6lio:A, 6lio:B, 5m4k:A, 5m4m:A, 5m4n:A, 5m4p:A, 4mp2:A, 4mp7:A, 4mpc:A, 4mpe:A, 4mpn:A, 6tmp:AAA, 6tmq:AAA, 6tmz:AAA, 6tn0:AAA, 6tn2:AAA, 4v25:A, 4v26:A, 7vbu:A, 7vbv:A, 7vbv:B, 7vbx:A, 8zm1:A, 8zm2:A
8 8uhe:K 593 44 0.1831 0.0219 0.2955 7.2
9 5o4j:A 264 26 0.1408 0.0379 0.3846 7.9 5o4h:A, 5o4h:B, 5o4h:C, 5o4h:D, 5o4j:B, 5o4j:C, 5o4j:D, 5o4m:A, 5o4m:B, 5o4m:C, 5o4m:D, 5o4n:A, 5o4n:B, 5o4n:C, 5o4n:D
10 6a30:A 527 62 0.2676 0.0361 0.3065 8.0
11 5ue8:A 847 62 0.2676 0.0224 0.3065 8.8 5ue8:B, 1y8f:A
12 2wzv:B 223 28 0.1549 0.0493 0.3929 9.6 2wzv:A, 2wzw:A, 2wzw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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