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BioLiP
>protein
TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dp7:P 76 76 1.0000 1.0000 1.0000 1.12e-52
2 4e4f:B 381 25 0.1447 0.0289 0.4400 0.049 4e4f:C, 4il2:A, 4il2:C, 4il2:D
3 4il2:B 404 30 0.1579 0.0297 0.4000 0.10 4e4f:A, 4e4f:D
4 6aqz:A 334 12 0.1316 0.0299 0.8333 0.54 6aqz:B, 6aqz:C, 6aqz:E, 6aqz:F
5 3av4:A 1140 50 0.1711 0.0114 0.2600 0.73 3av5:A, 3av6:A, 4da4:B, 5gut:A, 5guv:A, 3pt9:A, 6w8v:B, 6w8w:A, 6w8w:B, 5wy1:A
6 2xzl:A 756 18 0.1316 0.0132 0.5556 4.2
7 9fvt:A 519 22 0.1184 0.0173 0.4091 8.1 9fvt:B, 9fvt:C, 9fvt:D
8 6yw5:RR 134 20 0.1184 0.0672 0.4500 8.1 6ywe:RR, 6ywx:RR, 6ywy:RR

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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