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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAE
ACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYRE

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c23:DDD 135 135 0.9926 0.9926 0.9926 8.78e-94 8c23:HHH, 2zal:B, 2zal:D
2 2gez:B 133 120 0.5185 0.5263 0.5833 1.24e-40 2gez:D, 2gez:F, 2gez:H
3 4pu6:B 131 120 0.4593 0.4733 0.5167 5.33e-34
4 4o48:A 298 117 0.3778 0.1711 0.4359 4.69e-20 4o48:B
5 4osx:A 300 126 0.3926 0.1767 0.4206 9.36e-18 4o0d:A, 4o0d:B, 4o0f:A, 4o0f:B, 4o0h:A, 4o0h:B, 4osx:B, 4osy:A, 4osy:B, 4pvr:A, 4pvr:B, 4pvs:A, 4pvs:B, 4zm9:A, 4zm9:B, 4zm9:C, 4zm9:D
6 4osx:A 300 50 0.1333 0.0600 0.3600 4.4 4o0d:A, 4o0d:B, 4o0f:A, 4o0f:B, 4o0h:A, 4o0h:B, 4osx:B, 4osy:A, 4osy:B, 4pvr:A, 4pvr:B, 4pvs:A, 4pvs:B, 4zm9:A, 4zm9:B, 4zm9:C, 4zm9:D
7 1p4v:A 295 121 0.3333 0.1525 0.3719 6.21e-17 9gac:A, 9gac:C, 9gaf:A, 9gaf:C, 2gl9:B, 2gl9:D, 3ljq:C, 1p4v:C, 4r4y:A
8 2a8j:B 313 78 0.2593 0.1118 0.4487 4.80e-13 2a8j:A, 2a8m:A
9 1apz:B 141 99 0.2741 0.2624 0.3737 1.17e-11 1apz:D
10 3r7k:A 378 92 0.2148 0.0767 0.3152 0.28 3r7k:B, 3r7k:C, 3r7k:D
11 2d4v:A 427 46 0.1259 0.0398 0.3696 1.3 2d4v:B, 2d4v:C, 2d4v:D
12 7ybu:P 507 46 0.1185 0.0316 0.3478 5.2 7ybu:G, 7ybu:C, 7ybu:K, 7ybu:E, 7ybu:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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