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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTNPAHNLSDAFGEKFGKDARKVTGMNNL
SCMEIDPSAALKDMNDMALADLTGSIPGIDEALSFMEVMKHIKRQETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGK
LNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQECKRCQARWKMQKK
YLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYEL

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xtr:B 311 311 0.9898 0.9325 0.9325 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
2 3sja:A 338 334 0.9932 0.8609 0.8713 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3a36:A 314 322 0.9625 0.8981 0.8758 0.0 3a37:A, 5bwk:N
4 3sjd:C 292 302 0.9522 0.9555 0.9238 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
5 3idq:A 272 294 0.8669 0.9338 0.8639 1.05e-178
6 2woo:A 303 303 0.5973 0.5776 0.5776 6.29e-107 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
7 3ibg:A 300 308 0.5768 0.5633 0.5487 3.97e-104 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
8 3io3:A 230 292 0.5597 0.7130 0.5616 1.87e-103
9 8odu:A 291 293 0.5461 0.5498 0.5461 3.76e-100
10 3iqx:A 261 284 0.5256 0.5900 0.5423 1.66e-94 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 316 0.5017 0.4696 0.4652 2.24e-86 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 299 0.4881 0.4673 0.4783 2.82e-82 7sq0:B
13 7spz:A 328 319 0.5051 0.4512 0.4639 8.65e-80 7spy:A
14 8hac:B 327 328 0.5017 0.4495 0.4482 2.48e-76 8hac:A
15 3zq6:B 288 282 0.3788 0.3854 0.3936 1.81e-48 3zq6:C
16 3zq6:D 307 299 0.3652 0.3485 0.3579 7.41e-45 3zq6:A
17 3ug7:A 317 286 0.3072 0.2839 0.3147 3.02e-43 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 1ii0:B 553 257 0.2628 0.1392 0.2996 5.48e-28 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
19 1ii0:B 553 293 0.2423 0.1284 0.2423 3.36e-05 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
20 5zme:A 638 290 0.2867 0.1317 0.2897 8.27e-26 5zmf:A
21 5zme:A 638 333 0.2969 0.1364 0.2613 3.35e-24 5zmf:A
22 6bs3:A 330 232 0.1809 0.1606 0.2284 2.89e-05 6bs4:A, 6bs5:A
23 8elf:B 384 196 0.1706 0.1302 0.2551 1.32e-04 8elf:A
24 6bs3:B 355 171 0.1263 0.1042 0.2164 0.002 6bs4:B
25 8egk:B 355 56 0.0614 0.0507 0.3214 0.003
26 2bej:A 245 120 0.1092 0.1306 0.2667 0.003 2bek:A, 2bek:B, 2bek:C, 2bek:D
27 5if9:A 251 128 0.1331 0.1554 0.3047 0.012 5if9:B, 5ihp:A, 5ihp:B
28 6iub:A 264 42 0.0580 0.0644 0.4048 0.032 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
29 3q9l:A 257 34 0.0580 0.0661 0.5000 0.061 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
30 2ynm:B 268 41 0.0580 0.0634 0.4146 0.11 2ynm:A
31 5u1g:D 211 96 0.1092 0.1517 0.3333 0.16 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
32 5tvk:B 242 56 0.0683 0.0826 0.3571 0.31 3k9g:A, 5tvk:A
33 6riq:C 254 25 0.0444 0.0512 0.5200 0.38 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
34 5k5z:D 314 41 0.0614 0.0573 0.4390 0.44 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
35 3fwy:A 268 43 0.0580 0.0634 0.3953 0.46 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
36 4v02:A 244 36 0.0546 0.0656 0.4444 0.78 4v02:B, 4v03:A, 4v03:B
37 6rm3:LC0 329 48 0.0683 0.0608 0.4167 1.4
38 6x91:A 592 184 0.1502 0.0743 0.2391 1.8 6x91:B, 6x91:C, 6x91:E, 6x91:F, 6x91:G
39 6x91:H 558 184 0.1502 0.0789 0.2391 1.8 6x91:D
40 7oj2:A 353 56 0.0614 0.0510 0.3214 3.0
41 7oj1:B 425 56 0.0614 0.0424 0.3214 3.8
42 7oj1:A 401 56 0.0614 0.0449 0.3214 4.0
43 3ixe:B 70 24 0.0307 0.1286 0.3750 6.2
44 2afh:E 289 34 0.0375 0.0381 0.3235 6.3 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
45 1g3q:A 237 78 0.0717 0.0886 0.2692 6.6 1g3r:A
46 6a20:A 395 44 0.0512 0.0380 0.3409 7.1 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
47 5e7p:A 719 28 0.0410 0.0167 0.4286 7.2 5e7p:B
48 8r9r:A 255 63 0.0648 0.0745 0.3016 7.9
49 2j3l:B 570 52 0.0580 0.0298 0.3269 8.0 2j3l:A, 2j3m:A, 2j3m:B
50 6nzj:A 273 40 0.0478 0.0513 0.3500 8.8 6nzj:B
51 8gri:F 482 119 0.0990 0.0602 0.2437 9.4 8gri:A, 8gri:B, 8gri:D, 8gri:C, 8gri:E, 8gri:G, 8gri:H, 7xqa:A, 7xqa:B, 7xqa:C, 7xqa:D, 7xqa:E, 7xqa:F, 7xqa:G, 7xqa:H, 7xx0:A, 7xx0:B, 7xx0:C, 7xx0:D, 7xx0:E, 7xx0:G, 7xx0:F, 7xx0:H, 7xxc:A, 7xxc:C, 7xxc:B, 7xxc:D, 7xxc:E, 7xxc:G, 7xxc:F, 7xxc:H, 7xxd:A, 7xxd:B, 7xxd:C, 7xxd:D, 7xxd:E, 7xxd:F, 7xxd:G, 7xxd:H, 7xxm:A, 7xxm:C, 7xxm:B, 7xxm:D, 7xxm:E, 7xxm:G, 7xxm:F, 7xxm:H, 7xxp:A, 7xxp:B, 7xxp:C, 7xxp:D, 7xxp:E, 7xxp:F, 7xxp:G, 7xxp:H, 7xxr:A, 7xxr:C, 7xxr:B, 7xxr:D, 7xxr:E, 7xxr:G, 7xxr:F, 7xxr:H, 7xye:A, 7xye:B, 7xye:C, 7xye:D, 7xye:E, 7xye:F, 7xye:G, 7xye:H, 7xyl:A, 7xyl:C, 7xyl:B, 7xyl:D, 7xyl:E, 7xyl:G, 7xyl:F, 7xyl:H, 7y0x:A, 7y0x:C, 7y0x:B, 7y0x:D, 7y0x:E, 7y0x:G, 7y0x:F, 7y0x:H
52 3kb1:A 243 57 0.0648 0.0782 0.3333 9.6 3kb1:B, 6oby:A, 6oby:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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