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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTPTKMATLTTKQMWQTIKDYFGDGFVTGSAPISYNVHTCDMQLQPDSGIHAASDGIHYGVQISEDSMPLFSIMGDTAAP
PCTCHRVDEIVKHIDEFLERAPEALPDDGAITSGKPCDTNPDQVSLYAMRDSLSWWVHWGGNLRPEHYWKQIYIGFAAIP
DDVQISPREFLDGTYRYLGHTWDDCLSGLEEEGVSPDEIEFANMCMWRQMLTQWLEKADPELLPLLKGKISLMLQYRVLT
ANTLGCLALFMNATADPKDGPIHYADSSYEMEIASVAQCVTLDMAKEAMGILQGEVVAGDRAQRKRELRWIYVRCMQILE
SQPHAHMLRRYGSAGLHYVPMMDRYLERVSGHTRFPIRDGAARILERFINRAELPKESEDINPNGR

The query sequence (length=386) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oc4:A 389 388 0.9974 0.9897 0.9923 0.0 7oc4:B, 7oc5:A, 7oc5:B, 7oc6:A
2 6pub:A 210 55 0.0415 0.0762 0.2909 0.88 6u9c:A, 6u9c:B, 6u9c:C
3 7xrc:C 134 22 0.0259 0.0746 0.4545 1.2 2xsd:C
4 3alo:A 289 64 0.0518 0.0692 0.3125 2.3
5 3aln:A 270 64 0.0518 0.0741 0.3125 2.6 3aln:B
6 8g8e:X 140 22 0.0259 0.0714 0.4545 2.6 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
7 6day:D 273 63 0.0466 0.0659 0.2857 3.3 6day:A, 6day:B, 6day:C, 6ofw:A, 6ofw:B, 6q62:A, 6q62:C, 6q62:D, 6q62:B
8 3aln:C 183 64 0.0518 0.1093 0.3125 3.3
9 5unc:A 289 54 0.0466 0.0623 0.3333 3.9 5unc:B, 5unc:C, 5unc:D
10 7xn7:J 67 41 0.0389 0.2239 0.3659 4.6 6a5l:J, 6a5o:J, 6a5p:J, 6a5r:J, 6a5t:J, 6a5u:J, 8h0v:J, 8h0w:J, 8he5:J, 6inq:J, 6ir9:J, 6j4w:J, 6j4x:J, 6j4y:J, 6j4z:J, 6j50:J, 6j51:J, 8jh2:J, 8jh3:J, 8jh4:J, 7wbv:J, 7wbw:J, 7wbx:J, 5x4z:J, 5x4z:V, 5x50:J, 5x51:J, 5x51:V, 5xog:J, 5xon:J, 7xse:J, 7xsx:J, 7xsz:J, 7xt7:J, 7xtd:J, 7xti:J, 8yfq:J, 8yfr:J
11 7b9v:Q 624 54 0.0440 0.0272 0.3148 5.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218