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BioLiP
>protein
TSSHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKKSAAPVTYDVSQVYEFLDKLSDVSMMIFNRETGQYIG
RTRAWIKQQVYEMMRGR

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7o6n:B 97 97 1.0000 1.0000 1.0000 5.88e-70 7o6n:A
2 3uva:C 405 56 0.1649 0.0395 0.2857 0.30 3uu0:A, 3uu0:B, 3uu0:C, 3uu0:D, 3uva:A, 3uva:B, 3uva:D, 3uxi:A
3 6zu5:SH0 156 38 0.1443 0.0897 0.3684 2.0
4 5kp7:A 410 70 0.1856 0.0439 0.2571 5.2 5kp8:A
5 5nrg:D 137 23 0.1237 0.0876 0.5217 6.5
6 6zdu:A 693 67 0.1649 0.0231 0.2388 7.5 6zdq:A, 6zdu:B
7 5fqg:A 583 55 0.1340 0.0223 0.2364 7.9 5fqh:A, 5fr0:A
8 8p2f:J 176 23 0.1237 0.0682 0.5217 8.0 7asm:F, 7aso:K, 7asp:F, 6fxc:AF, 6fxc:BF, 5hkv:D, 5hl7:D, 6hma:F, 5li0:G, 5nd8:G, 5nd9:G, 5ngm:AF, 7nhl:J, 7nhm:J, 8p2g:J, 8p2h:J, 7p48:F, 6s0x:F, 6s0z:F, 6s12:F, 6s13:F, 5tcu:LK, 4wce:D, 4wf9:D, 4wfa:D, 8y36:F, 8y37:F, 8y38:F, 8y39:F, 6yef:G
9 4wfb:D 139 26 0.1340 0.0935 0.5000 9.0
10 7r04:A 2326 28 0.0928 0.0039 0.3214 9.2
11 7pgr:N 2423 28 0.0928 0.0037 0.3214 9.2 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
12 6o8w:F 177 23 0.1237 0.0678 0.5217 9.4 7nhk:J, 6o8x:F, 6o8y:F, 6o8z:F, 6o90:F, 7p7q:J, 7p7r:J, 7p7s:J, 7p7t:J, 7p7u:J, 6w6p:F, 6wu9:F
13 3vol:A 138 34 0.1031 0.0725 0.2941 9.9 4hi4:A, 4hi4:B, 4hi4:D, 4hi4:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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