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BioLiP
>protein
TSSHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKKSAAPVTYDVSQVYEFLDKLSDVSMMIFNRETGQYIG
RTRAWIKQQVYEMMR

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7o6n:B 97 95 1.0000 0.9794 1.0000 3.22e-68 7o6n:A
2 3uva:C 405 56 0.1684 0.0395 0.2857 0.31 3uu0:A, 3uu0:B, 3uu0:C, 3uu0:D, 3uva:A, 3uva:B, 3uva:D, 3uxi:A
3 6zu5:SH0 156 38 0.1474 0.0897 0.3684 1.9
4 5nrg:D 137 23 0.1263 0.0876 0.5217 5.4
5 5kp7:A 410 70 0.1895 0.0439 0.2571 5.8 5kp8:A
6 8p2f:J 176 23 0.1263 0.0682 0.5217 6.4 7asm:F, 7aso:K, 7asp:F, 6fxc:AF, 6fxc:BF, 5hkv:D, 5hl7:D, 6hma:F, 5li0:G, 5nd8:G, 5nd9:G, 5ngm:AF, 7nhl:J, 7nhm:J, 8p2g:J, 8p2h:J, 7p48:F, 6s0x:F, 6s0z:F, 6s12:F, 6s13:F, 5tcu:LK, 4wce:D, 4wf9:D, 4wfa:D, 8y36:F, 8y37:F, 8y38:F, 8y39:F, 6yef:G
7 4wfb:D 139 26 0.1368 0.0935 0.5000 6.9
8 6zdu:A 693 49 0.1368 0.0188 0.2653 7.6 6zdq:A, 6zdu:B
9 6o8w:F 177 23 0.1263 0.0678 0.5217 7.8 7nhk:J, 6o8x:F, 6o8y:F, 6o8z:F, 6o90:F, 7p7q:J, 7p7r:J, 7p7s:J, 7p7t:J, 7p7u:J, 6w6p:F, 6wu9:F
10 5fqg:A 583 55 0.1368 0.0223 0.2364 8.8 5fqh:A, 5fr0:A
11 7z87:A 3689 23 0.0842 0.0022 0.3478 9.6
12 7k17:B 3645 23 0.0842 0.0022 0.3478 9.7 7k17:A
13 7pgr:N 2423 28 0.0947 0.0037 0.3214 9.7 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
14 8ez9:L 3662 23 0.0842 0.0022 0.3478 9.8 8ez9:C
15 7k1j:A 3584 23 0.0842 0.0022 0.3478 9.9 7k19:A
16 7k0y:A 3669 23 0.0842 0.0022 0.3478 9.9
17 6zha:A 3707 23 0.0842 0.0022 0.3478 9.9 6zh8:A
18 8eza:L 3720 23 0.0842 0.0022 0.3478 9.9 8eza:C, 7lt3:C, 7lt3:L
19 8ezb:C 3724 23 0.0842 0.0021 0.3478 9.9 8ezb:L
20 6zhe:A 3768 23 0.0842 0.0021 0.3478 9.9
21 7r04:A 2326 28 0.0947 0.0039 0.3214 9.9
22 7nfc:A 3562 23 0.0842 0.0022 0.3478 10.0 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
23 7otm:A 3656 23 0.0842 0.0022 0.3478 10.0 7otp:A, 7otv:A, 7otw:A, 7oty:A
24 6zhe:F 3731 23 0.0842 0.0021 0.3478 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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