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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TSKWIDISQPLNNDIATWPGDTPFSYEVLWSKEESGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQVYVGPTRI
IDVSNLESIGKKELEKFHLEGVERLLLRTSSHGKANEFPDIIPHLRADIAPFLSEKGIRLIGVDVPSVDPLDDKELAAHH
QLFKHSIHILENVVLDHVADGDYELIALPLALSDADGSPVRAVIRPI

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4co9:A 207 207 1.0000 1.0000 1.0000 3.28e-150 4co9:B, 4co9:C, 4co9:D, 4cz1:A, 4cz1:B, 4cz1:C, 4cz1:D
2 4cog:A 207 201 0.4010 0.4010 0.4129 6.94e-52 4cog:B, 4cog:C, 4cog:D
3 4cob:A 206 204 0.4203 0.4223 0.4265 1.25e-50 4cob:B
4 8hmo:A 205 204 0.3043 0.3073 0.3088 2.96e-24 8hmo:B, 8hmo:C, 8hmo:D, 8hmo:E, 8hmo:F
5 1r61:A 205 172 0.2415 0.2439 0.2907 2.23e-17 3krv:B, 1r61:B
6 5nna:D 264 197 0.2609 0.2045 0.2741 8.72e-07 5nna:A, 5nna:B, 5nna:C, 5nnb:A, 5nnb:B, 5nnb:C, 5nnb:D
7 4m8d:D 263 195 0.2560 0.2015 0.2718 8.24e-06 4j0n:A, 4j0n:B, 4m8d:A, 4m8d:B, 4m8d:C, 4m8d:E, 4m8d:F, 4m8d:G, 4m8d:H, 4m8d:I, 4m8d:J, 4m8d:K, 4m8d:L
8 8f9x:A 230 78 0.1159 0.1043 0.3077 6.25e-05 8f9x:B, 8f9x:C, 8f9x:D, 8f9x:E, 8f9x:F, 8f9x:G, 8f9x:H, 8f9x:I, 8f9x:J
9 5nmp:A 265 214 0.2415 0.1887 0.2336 0.003 5nmp:B, 5nmp:C, 5nmp:D, 5nmp:E, 5nmp:F, 5nmp:G, 5nmp:H, 5nmp:I, 5nmp:J
10 3td7:A 253 159 0.1981 0.1621 0.2579 1.6 3gwn:A, 3gwn:B
11 5jc7:A 641 86 0.1159 0.0374 0.2791 3.8
12 6uss:A 485 101 0.1353 0.0577 0.2772 7.6 6uss:B
13 5jc3:A 668 89 0.1111 0.0344 0.2584 8.9 5jc3:B, 5jc7:B, 5jcf:A, 5jcf:B, 5jch:A, 5jch:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218