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BioLiP
>protein
TSINCKNIQSTQLTIEHLSKCMAFYQNKTSSPVVINEIISDASVDEQELIKSLNLNCNVIDRFISESSVIETQVYYEYIK
SQLCPLQVHDIFTINSASNIQWKALARSFTLGVCNTNPHKHICRCLESMQMCTSTKTDHAREMSIYYDGHPDRFEHDMKI
ILNIMRYIVPGLGRVLLDQIKQTKDYQALRHIQGKLSPKSQSNLQLKGFLEFVDFILGANVTIEKTPQTLTTLSLIGGWS
HPQFEK

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6h3u:A 246 246 1.0000 1.0000 1.0000 0.0 6h3t:A, 6h3t:B, 6h3u:B
2 4k36:A 381 52 0.0569 0.0367 0.2692 2.3 4k36:B, 4k37:A, 4k37:B, 4k38:B, 4k38:A, 4k39:B, 4k39:A
3 2dip:A 98 69 0.0691 0.1735 0.2464 2.4
4 6c0e:A 419 46 0.0610 0.0358 0.3261 3.5 6c0e:B
5 6lga:A 570 23 0.0447 0.0193 0.4783 7.4 6lga:B, 6lgb:A, 6lgb:B, 6lgc:A, 6lgc:B, 6lgd:A, 6lgd:B, 6lge:A, 6lge:B, 6lgf:A, 6lgf:B, 6lgg:A, 6lgg:B, 6lgh:A, 6lgh:B, 6lgi:A, 6lgi:B
6 5d88:A 247 10 0.0366 0.0364 0.9000 7.6
7 1isv:A 436 30 0.0447 0.0252 0.3667 8.0 2d20:A, 2d20:B, 2d22:A, 2d22:B, 2d23:A, 2d23:B, 2d24:A, 2d24:B, 1e0v:A, 1e0x:A, 1e0x:B, 2g3j:A, 5gqd:A, 5gqd:B, 5gqe:A, 5gqe:B, 1isv:B, 1isw:A, 1isw:B, 1isx:A, 1isx:B, 1isy:A, 1isy:B, 1isz:A, 1isz:B, 1it0:A, 1it0:B, 1od8:A, 1v0k:A, 1v0l:A, 1v0m:A, 1v0n:A, 1v6u:A, 1v6u:B, 1v6v:A, 1v6v:B, 1v6w:A, 1v6w:B, 1v6x:A, 1v6x:B
8 7svj:B 326 52 0.0610 0.0460 0.2885 8.4
9 6ks6:g 520 92 0.0813 0.0385 0.2174 8.7 6ks6:G, 4v81:C, 4v81:k, 4v8r:AG, 4v8r:Ag, 4v8r:BG, 4v8r:Bg, 4v94:C, 4v94:K, 4v94:c, 4v94:k, 7ylw:G, 7ylw:g, 7ylx:G, 7ylx:g, 7yly:G, 7yly:g
10 8xte:A 395 98 0.1138 0.0709 0.2857 9.2 8xte:B, 8xte:C, 8xte:D, 8xte:E, 8xte:F, 8xtf:A, 8xtg:A, 8xtg:B, 8xtg:C, 8xtg:D, 8xtg:E, 8xtg:F
11 5li0:D 275 41 0.0488 0.0436 0.2927 10.0 7asm:C, 7asn:F, 7asp:C, 6ddd:B, 6ddg:B, 6fxc:AC, 6fxc:BC, 5hkv:A, 5hl7:A, 6hma:C, 5nd8:D, 5nd9:D, 5ngm:AC, 7nhl:G, 7nhm:G, 5nrg:A, 8p2f:G, 8p2g:G, 8p2h:G, 7p48:C, 6s0x:C, 6s0z:C, 6s12:C, 6s13:C, 6sj6:D, 5t7v:L2, 5tcu:L2, 7ttu:B, 7ttw:B, 4wce:A, 4wf9:A, 4wfa:A, 4wfb:A, 6wqn:B, 6wqq:B, 6wrs:B, 6wru:B, 8y36:C, 8y37:C, 8y38:C, 8y39:C, 6yef:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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