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BioLiP
>protein
TRMRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRTARYRPELS

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d3t:D 62 62 1.0000 1.0000 1.0000 3.29e-42 7d3t:A, 7d3t:B, 7d3t:C
2 6j5b:C 59 57 0.7742 0.8136 0.8421 3.44e-32 6j4r:A, 6j4r:D, 6j4r:B, 6j4r:C, 6j5b:A, 6j5b:D, 6j5b:F, 6j5b:H, 6j5b:J
3 8xas:C 63 53 0.4839 0.4762 0.5660 2.20e-13 8xas:B, 8xas:D, 8xas:A, 8xas:E, 8xas:F
4 6qec:A 65 52 0.4516 0.4308 0.5385 3.61e-13 5lxu:A
5 6r0r:A 162 19 0.1452 0.0556 0.4737 0.75 6r0f:A, 6r0f:B, 6r0g:A, 6r0g:B, 6r0p:A, 6r0p:B, 6r0t:A, 6r0t:B
6 2a1t:C 388 43 0.2903 0.0464 0.4186 0.87 2a1t:A, 2a1t:B, 2a1t:D, 1egc:A, 1egc:B, 1egc:C, 1egc:D, 1egd:A, 1egd:B, 1egd:C, 1egd:D, 1ege:A, 1ege:B, 1ege:C, 1ege:D, 4p13:A, 4p13:B, 4p13:C, 4p13:D, 8sgp:A, 8sgp:B, 8sgp:C, 8sgp:D, 1t9g:A, 1t9g:B, 1t9g:C, 1t9g:D
7 7p9a:A 380 43 0.2581 0.0421 0.3721 0.89 7p98:A, 7p98:B, 7p9a:B, 7p9x:A, 7p9x:B, 7p9x:C, 7p9x:D
8 6tz8:C 111 31 0.2097 0.1171 0.4194 1.9 6tz8:F
9 8iyk:L 232 22 0.1452 0.0388 0.4091 2.1 8iyk:N, 8iyk:f, 8iyl:L, 8iyl:G, 8iyl:d, 8k35:J, 8k35:G, 8k35:N, 8xcg:L, 8xcg:N, 8xcg:f
10 8bpl:A 316 27 0.1774 0.0348 0.4074 2.2
11 4gcm:B 309 40 0.1935 0.0388 0.3000 2.4 4gcm:A
12 3ckg:A 236 25 0.2097 0.0551 0.5200 2.6
13 5oyn:A 589 24 0.1774 0.0187 0.4583 2.7 5oyn:B, 5oyn:C, 5oyn:D
14 2vs4:A 288 24 0.1935 0.0417 0.5000 3.7 1g8o:A, 1g93:A, 1gwv:A, 1gwv:B, 1gww:A, 1gww:B, 1gx0:A, 1gx0:B, 1gx4:A, 1gx4:B, 2jcj:A, 2jck:A, 1k4v:A, 1k4v:B, 5nrb:A, 5nrb:B, 5nrd:A, 5nrd:B, 5nre:A, 1o7o:A, 1o7o:B, 1o7q:A, 1o7q:B, 2vfz:A, 2vfz:B, 2vs3:A, 2vs3:B, 2vs4:B, 2vs5:A, 2vs5:B, 2vxl:A, 1vzt:A, 1vzt:B, 1vzu:A, 1vzu:B, 1vzx:A, 1vzx:B, 2wgz:A, 2wgz:B
15 1yht:A 344 52 0.2581 0.0465 0.3077 5.9
16 6s9u:A 520 19 0.1452 0.0173 0.4737 6.2
17 7zlg:A 662 13 0.1290 0.0121 0.6154 6.6 7zli:A, 7zlj:A
18 4d8f:B 334 35 0.2097 0.0389 0.3714 7.8 2ani:A, 4d8f:A, 4d8f:C, 4d8f:D, 4d8g:A, 4d8g:B, 4d8g:C, 4d8g:D, 4m1i:A, 4m1i:B, 4m1i:C, 4m1i:D, 1syy:A
19 1v9p:A 584 41 0.1935 0.0205 0.2927 7.9 1dgs:A, 1dgs:B, 1v9p:B
20 3s6h:A 436 30 0.1935 0.0275 0.4000 8.7 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
21 2czy:A 77 24 0.1613 0.1299 0.4167 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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