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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQPSDWAYIAGAHIVFSYQGQSKTYATRALRVRKESLAAAAANDVSGQWRRNILPKLVPRQLLTTSREVTLEEGWYKELL
AMVRRGVLLEDLTSNVDDDGAITVAIEIKPKWGFLPCAGHLQPPESVSIKSHVSRFRLHQHFRGRADDPPYDPLDLFSGD
KMRMRTALDGLWTMWEISRGKSNNWKVFIGSKEISPDDLQRGLLPMGGDDLVTNITQLTLSALQTSSALPLLKNLQQNLD
PIDISSLAALFQAEHPNSPIFDPDLIAEVSAVELNSFVDIYISDPQAGQRMDSWSLRERIIAYALSAIFKDCSLFVRGVL
KHAWRLVSGGESVKVIDLDLKPVKNIQKWAETDEKVWKHWLKTKGTR

The query sequence (length=367) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xu6:C 379 377 0.9864 0.9551 0.9602 0.0 5xu6:A, 5xu6:B, 5xu6:D
2 6fl3:B 420 434 0.2916 0.2548 0.2465 2.63e-17 4axc:A, 4axf:A, 6fjk:B, 6fl8:B, 6gfg:B, 6gfg:A, 6gfh:A, 6gfh:B, 4lv7:B, 3udt:A, 3udt:B, 3udz:A, 3udz:B, 2xan:A, 2xao:A
3 4lv7:A 390 426 0.2943 0.2769 0.2535 1.19e-16 3uds:A, 3uds:B
4 4axd:A 433 452 0.3025 0.2564 0.2456 5.51e-16 4aqk:A, 4axe:A, 6fjk:A, 6fl3:A, 6fl8:A, 2xal:A, 2xal:B, 2xam:A, 2xam:B, 2xan:B, 2xao:B, 2xar:A, 2xar:B
5 5mwl:A 421 312 0.2180 0.1900 0.2564 1.93e-11 5mw8:A, 5mwl:B, 5mwm:A
6 4xz6:A 291 162 0.1063 0.1340 0.2407 1.5 4xz6:B
7 1n47:B 233 59 0.0572 0.0901 0.3559 4.0 1n47:A, 1n47:C, 1n47:D
8 6cd1:A 452 35 0.0272 0.0221 0.2857 4.2 6ccz:A, 6ccz:B, 6cd1:B, 6cd1:C, 6cd1:D, 6cd1:E, 6cd1:F, 6cd1:G, 6cd1:H
9 2glf:A 450 57 0.0518 0.0422 0.3333 8.8 2glf:B, 2glf:C, 2glf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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