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BioLiP
>protein
TPVKIPILMYHAIHVMSPEETANANLIVNPDLFDQQLQKMKDEGYYFLSPEEVYRALSNNELPAKKVVWLTFDDSMIDFY
NVAYPILKKYDAKATNNVITGLTEMGSAANLTLKQMKEMKQVGMSFQDHTVNHPDLEQASPDVQTTEMKDSKDYLDKQLN
QNTIAIAYPSGRYNDTTLQIAARLNYKLGVTTNEGIASAANGLLSLNRIRILPNMSPENLLQTMEP

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6dq3:A 227 226 1.0000 0.9956 1.0000 5.18e-170 6dq3:B
2 4hd5:A 316 231 0.3142 0.2247 0.3074 2.05e-18 4v33:A, 4v33:B
3 6go1:A 318 223 0.2788 0.1981 0.2825 5.20e-16 6go1:B
4 4u10:A 264 217 0.2345 0.2008 0.2442 3.10e-08 4u10:B
5 4wcj:A 233 226 0.2257 0.2189 0.2257 6.79e-08
6 4f9j:A 599 232 0.2345 0.0885 0.2284 5.99e-05 4f9d:A, 4f9d:B, 4f9j:B, 4p7n:A, 4p7q:A, 4p7r:A, 3vus:A, 3vus:B
7 2c1g:A 384 116 0.1637 0.0964 0.3190 0.003 2c1i:A
8 7bly:A 216 121 0.1416 0.1481 0.2645 0.003
9 2y8u:B 212 122 0.1416 0.1509 0.2623 0.031 2y8u:A
10 6h8l:B 206 114 0.1416 0.1553 0.2807 0.13 6h8l:A, 6h8n:A, 6h8n:B
11 2iw0:A 226 83 0.1062 0.1062 0.2892 0.14
12 8hfa:A 212 73 0.0841 0.0896 0.2603 0.46 8hfa:B, 8hfa:C, 8hfa:D, 8hfa:E
13 7ax7:A 205 86 0.1106 0.1220 0.2907 0.63
14 5jmu:A 220 33 0.0575 0.0591 0.3939 0.75
15 5o6y:A 214 123 0.1327 0.1402 0.2439 0.89 5o6y:B, 5o6y:C, 5o6y:D
16 3ldf:A 380 48 0.0752 0.0447 0.3542 0.95
17 4q7r:A 223 72 0.0841 0.0852 0.2639 2.2 8bgl:A, 8bgl:B, 4q7r:B
18 5n1j:A 206 65 0.0929 0.1019 0.3231 3.2 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
19 6hiv:Ab 453 50 0.0664 0.0331 0.3000 5.6 6hix:Ab
20 8xqw:R 401 65 0.0708 0.0399 0.2462 7.2 8xqx:R
21 1h3d:A 288 41 0.0619 0.0486 0.3415 7.7 1q1k:A
22 6p3o:A 341 52 0.0664 0.0440 0.2885 7.8 6p3m:A, 6p3n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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