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BioLiP
>protein
TPDCVTGKVEYTKYNDEDTFTVKVGDKELFTNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bos:A 69 69 0.9710 0.9710 0.9710 8.84e-46 1bos:B, 1bos:C, 1bos:D, 1bos:E, 1bos:F, 1bos:G, 1bos:H, 1bos:I, 1bos:J, 1bos:K, 1bos:L, 1bos:M, 1bos:N, 1bos:O, 1bos:P, 1bos:Q, 1bos:R, 1bos:S, 1bos:T, 1c4q:A, 1c4q:B, 1c4q:C, 1c4q:D, 1c4q:E, 2c5c:A, 2c5c:F, 2c5c:B, 2c5c:C, 2c5c:D, 2c5c:E, 2c5c:G, 2c5c:H, 2c5c:I, 2c5c:J, 1cqf:A, 1cqf:B, 1cqf:C, 1cqf:D, 1cqf:E, 1d1i:A, 1d1i:B, 1d1i:C, 1d1i:D, 1d1i:E, 1d1k:A, 1d1k:B, 1d1k:C, 1d1k:D, 1d1k:E, 1qnu:A, 1qnu:B, 1qnu:C, 1qnu:D, 1qnu:E
2 7d6q:C 70 66 0.6087 0.6000 0.6364 2.80e-27 7d6q:B, 7d6q:D, 7d6q:F, 7d6r:D, 7d6r:B, 7d6r:C, 7d6r:F, 2ga4:B, 2ga4:C, 2ga4:D, 2ga4:F, 4m1u:F, 4m1u:B, 4m1u:C, 4m1u:D, 3mxg:F, 3mxg:J, 3mxg:C, 3mxg:D, 1r4p:B, 1r4p:C, 1r4p:D, 1r4p:E, 1r4p:F, 7ujj:B, 7ujj:C, 7ujj:D, 7ujj:F, 7vhc:D, 7vhc:B, 7vhc:C, 7vhc:F, 7vhd:D, 7vhd:B, 7vhd:C, 7vhd:F, 7vhe:B, 7vhe:C, 7vhe:D, 7vhe:F, 7vhf:B, 7vhf:C, 7vhf:D, 7vhf:F
3 2bos:A 68 66 0.5942 0.6029 0.6212 1.25e-26 2bos:B, 2bos:C, 2bos:E
4 8qbb:A 271 47 0.2464 0.0627 0.3617 0.004 8qbb:J, 8qbb:F, 8qbb:B, 8qbb:C, 8qbb:I, 8qbb:D, 8qbb:E, 8qbb:K, 8qbb:L, 8qbb:G, 8qbb:M, 8qbb:H, 8qbb:N, 8qbd:A, 8qbd:B, 8qbd:C, 8qbd:I, 8qbd:D, 8qbd:J, 8qbd:E, 8qbd:K, 8qbd:F, 8qbd:L, 8qbd:G, 8qbd:M, 8qbd:H, 8qbd:N, 8qbf:A, 8qbf:B
5 7ybu:A 670 51 0.2609 0.0269 0.3529 1.3 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
6 6nus:A 715 51 0.3043 0.0294 0.4118 2.6
7 4mt4:B 473 32 0.2029 0.0296 0.4375 3.1 4mt4:A, 4mt4:C
8 4nkt:B 308 32 0.1884 0.0422 0.4062 3.2
9 4e80:C 330 32 0.1884 0.0394 0.4062 3.2 4e80:A, 4e80:B, 4e80:D, 4ep7:A, 4ep7:B, 4fh5:A, 4fhp:A, 4fhv:A, 4fhw:A, 4fhx:A, 4fhy:A, 4nkt:A, 4nku:A, 4nku:B
10 7ooc:H 128 60 0.2464 0.1328 0.2833 3.4 7p6z:H, 7pah:H, 7pai:H, 7paj:H, 7pak:H, 7pal:H, 7pam:H, 7pan:H, 7pao:H, 7paq:H, 7par:H, 7pas:H, 7ph9:H, 7pha:H, 7phb:H, 7phc:H, 7pi8:H, 7pi9:H, 7pia:H, 7pib:H, 7pic:H, 7pio:H, 7pip:H, 7piq:H, 7pir:H, 7pis:H, 7pit:H
11 4aq1:A 721 34 0.1884 0.0180 0.3824 4.0 4aq1:C
12 3gtt:A 153 20 0.1304 0.0588 0.4500 6.8 3gtt:B, 3gtt:C, 3gtt:D, 3gtt:E, 3gtt:F, 3ltv:A, 3ltv:B, 3ltv:C, 3ltv:D, 3ltv:E, 3ltv:F
13 6yuf:D 1272 41 0.1594 0.0086 0.2683 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218