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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTK
CLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLK
VALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVN
GRTVEETQVPEISGYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEAL
QRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGF
LAAFDAAWMVKRWAEGAGPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD

The query sequence (length=477) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8y6k:A 741 479 0.9203 0.5924 0.9165 0.0 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
2 6ici:A 585 476 0.6059 0.4940 0.6071 0.0
3 2dq4:A 343 124 0.0692 0.0962 0.2661 0.004 2dq4:B, 2ejv:A, 2ejv:B
4 4k2x:B 490 57 0.0440 0.0429 0.3684 0.017 4k2x:A
5 5ygq:A 341 30 0.0356 0.0499 0.5667 0.033 5ygq:B
6 1ebd:A 455 31 0.0377 0.0396 0.5806 0.059 1ebd:B
7 7a7b:G 265 30 0.0252 0.0453 0.4000 0.096
8 4ilk:A 337 88 0.0608 0.0861 0.3295 0.11 4ilk:B
9 7apr:G 293 30 0.0252 0.0410 0.4000 0.12
10 7a7b:A 323 30 0.0252 0.0372 0.4000 0.13 7a7b:B, 7a7b:C, 7a7b:D, 7a7b:E, 7a7b:F, 7a7b:H, 7apr:A, 7apr:B, 7apr:C, 7apr:D, 7apr:E, 7apr:F, 7apr:H
11 6brd:A 474 37 0.0356 0.0359 0.4595 0.13 6brd:B, 6brd:C, 5vqb:A, 5vqb:B, 5vqb:C
12 2qa2:A 489 101 0.0671 0.0654 0.3168 0.16
13 5kow:A 474 124 0.0818 0.0823 0.3145 0.16 6c7s:A, 5kox:A
14 7a76:A 326 29 0.0252 0.0368 0.4138 0.17 7a76:B, 7a76:C, 7a76:D
15 7a76:A 326 45 0.0273 0.0399 0.2889 5.8 7a76:B, 7a76:C, 7a76:D
16 3e1t:A 437 52 0.0440 0.0481 0.4038 0.18
17 6qkg:B 664 72 0.0503 0.0361 0.3333 0.28 6qkg:A, 6qkr:A, 6qkr:B, 6qkx:A
18 3k30:A 684 32 0.0356 0.0249 0.5312 0.30 3k30:B
19 4a2c:A 346 98 0.0524 0.0723 0.2551 0.30 4a2c:B, 4uej:A, 4uej:B, 4uek:A, 4uek:B, 4ueo:A, 4ueo:B
20 8oh5:C 1172 55 0.0524 0.0213 0.4545 0.45 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
21 6bz0:A 469 30 0.0314 0.0320 0.5000 0.47 6bz0:B, 6bz0:C, 6bz0:D
22 6tjr:A 340 29 0.0377 0.0529 0.6207 0.52 6tjr:B
23 6j0z:C 488 41 0.0419 0.0410 0.4878 0.55
24 6ui5:A 497 123 0.0629 0.0604 0.2439 0.56 6ui5:B
25 6skf:BC 237 53 0.0419 0.0844 0.3774 0.75 6skg:BC, 6th6:BC
26 6de6:B 652 46 0.0398 0.0291 0.4130 0.77
27 6de6:A 689 46 0.0398 0.0276 0.4130 0.81
28 3nlc:A 534 45 0.0314 0.0281 0.3333 0.96
29 3urh:B 465 32 0.0294 0.0301 0.4375 1.1 3urh:A
30 1qo8:A 564 31 0.0314 0.0266 0.4839 1.1 1qo8:D
31 2gmh:A 581 43 0.0398 0.0327 0.4419 1.1 2gmh:B, 2gmj:A, 2gmj:B
32 3i3l:A 550 61 0.0461 0.0400 0.3607 1.1
33 3rha:A 459 33 0.0314 0.0327 0.4545 1.2 3rha:B
34 3ihg:A 535 37 0.0377 0.0336 0.4865 1.2 3ihg:B, 3ihg:C
35 4dae:A 232 101 0.0545 0.1121 0.2574 1.3 4d8v:A, 4d8v:B, 4d9h:A, 4d9h:B, 4da0:A, 4da6:A, 4da7:A, 4da8:A, 4dab:A, 4dan:A, 4dan:B, 4dao:A, 4dao:B, 4dar:A
36 7cp7:A 430 42 0.0377 0.0419 0.4286 1.3 7cp6:A, 7cp6:B
37 4cy8:A 539 34 0.0294 0.0260 0.4118 1.5 4cy8:B, 4cy8:C, 4cy8:D
38 7d6v:A 601 39 0.0335 0.0266 0.4103 1.5 7d6x:A
39 6em0:A 566 32 0.0294 0.0247 0.4375 1.6 5brt:A, 5brt:B, 6em0:B, 4z2r:A, 4z2r:B, 4z2t:A, 4z2t:B, 4z2u:A, 4z2u:B
40 7koe:C 438 29 0.0335 0.0365 0.5517 2.1 7koe:G
41 2yqu:A 455 28 0.0335 0.0352 0.5714 2.2 2eq7:A, 2eq7:B, 2yqu:B
42 2jae:A 478 40 0.0294 0.0293 0.3500 2.2 2jae:B, 2jb1:A, 2jb1:B, 2jb2:A, 2jb2:B, 2jb3:A, 2jb3:B
43 3lad:A 472 29 0.0294 0.0297 0.4828 2.3 3lad:B
44 4jdr:A 471 31 0.0314 0.0318 0.4839 2.4 4jdr:B, 4jq9:A, 4jq9:B, 4jq9:C, 4jq9:D, 4jq9:E, 4jq9:F
45 4y4m:F 262 33 0.0314 0.0573 0.4545 2.5 4y4m:A, 4y4m:B, 4y4m:C, 4y4m:D, 4y4m:E, 4y4m:G, 4y4m:H
46 6hk1:A 261 31 0.0294 0.0536 0.4516 2.5 6hk1:B, 6hk1:F, 6hk1:C, 6hk1:D, 6hk1:E
47 7rk0:B 262 35 0.0314 0.0573 0.4286 2.8 7rk0:A, 7rk0:C, 7rk0:D
48 1jeh:A 478 33 0.0294 0.0293 0.4242 2.8 1jeh:B, 1v59:A, 1v59:B
49 6lqc:A 450 34 0.0335 0.0356 0.4706 2.8 6lql:A
50 1kdg:B 546 35 0.0294 0.0256 0.4000 2.9 1kdg:A, 1naa:A, 1naa:B
51 7ouj:AAA 540 72 0.0503 0.0444 0.3333 3.0
52 8fhj:C 532 39 0.0398 0.0357 0.4872 3.4 8fhj:A, 8fhj:B
53 4dsg:A 473 24 0.0273 0.0275 0.5417 3.6 4dsg:B, 4dsh:A, 4dsh:B
54 6uzi:C 470 27 0.0273 0.0277 0.4815 3.6 6uzi:A, 6uzi:B, 6uzi:D
55 4y4n:A 259 36 0.0294 0.0541 0.3889 3.6 4y4n:H, 4y4n:B, 4y4n:G, 4y4n:C, 4y4n:D, 4y4n:E, 4y4n:F
56 4ylf:B 468 29 0.0314 0.0321 0.5172 4.1 4ylf:D, 4yry:B, 4yry:D
57 2vvm:A 481 29 0.0252 0.0249 0.4138 4.4 2vvl:A, 2vvl:B, 2vvl:C, 2vvl:D, 2vvl:E, 2vvl:F, 2vvl:G, 2vvl:H, 2vvm:B, 3zdn:A, 3zdn:B, 3zdn:C, 3zdn:D
58 4cnj:A 391 35 0.0189 0.0230 0.2571 4.8 4cnj:B, 4cnj:C, 4cnj:D, 4cnk:A, 4cnk:B
59 5vj7:A 462 29 0.0273 0.0281 0.4483 4.9
60 2yg3:B 450 28 0.0294 0.0311 0.5000 4.9 2yg3:A, 2yg4:A, 2yg4:B, 2yg5:A, 2yg6:A, 2yg6:B, 2yg7:A, 2yg7:B
61 5jca:L 471 37 0.0294 0.0297 0.3784 5.0 5jfc:L
62 2dfv:A 346 108 0.0566 0.0780 0.2500 5.1 2d8a:A, 2dfv:B, 2dfv:C
63 1nq2:A 255 30 0.0252 0.0471 0.4000 5.1 1bsx:A, 1bsx:B, 3d57:A, 3d57:B, 3gws:X, 3imy:A, 2j4a:A, 3jzc:A, 6kkb:X, 6kke:A, 6knu:A, 6knv:A, 6knw:A, 1n46:A, 1n46:B, 1nax:A, 1nq0:A, 1nq1:A, 1nuo:A, 2pin:A, 2pin:B, 1q4x:A, 1r6g:A, 8rqn:A, 7wlx:A, 7wmg:A, 7wmh:A, 7wmj:A, 7wml:A, 7wmn:A, 7wmo:A, 1xzx:X, 1y0x:X, 4zo1:X
64 3nix:A 407 35 0.0356 0.0418 0.4857 5.2 3nix:B, 3nix:C, 3nix:D, 3nix:E, 3nix:F, 3nix:G, 3nix:H
65 2e5v:A 472 29 0.0273 0.0275 0.4483 5.5 2e5v:B
66 3jsk:A 292 37 0.0335 0.0548 0.4324 5.8 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
67 7fgp:A 379 75 0.0503 0.0633 0.3200 6.0 7fgp:B
68 5hxw:A 433 38 0.0314 0.0346 0.3947 6.3 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
69 8gu0:B 450 55 0.0398 0.0422 0.3455 6.5 8gu0:A
70 5u8u:D 477 31 0.0294 0.0294 0.4516 6.5 1lpf:A, 1lpf:B, 5u8u:A, 5u8u:B, 5u8u:C, 5u8v:A, 5u8v:B, 5u8v:C, 5u8v:D, 5u8w:A, 5u8w:B, 5u8w:C, 5u8w:D
71 6hg8:B 482 46 0.0335 0.0332 0.3478 7.0 2f5z:A, 2f5z:B, 2f5z:C, 2f5z:D, 2f5z:E, 2f5z:F, 2f5z:G, 2f5z:H, 2f5z:I, 2f5z:J, 6hg8:A, 6i4p:A, 6i4p:B, 6i4q:A, 6i4q:B, 6i4r:A, 6i4r:B, 6i4s:A, 6i4s:B, 6i4t:A, 6i4t:B, 6i4u:A, 6i4u:B, 6i4z:A, 6i4z:B, 6i4z:C, 6i4z:D, 6i4z:E, 6i4z:F, 6i4z:G, 6i4z:H, 5j5z:A, 5j5z:B, 5nhg:A, 5nhg:B, 5nhg:C, 5nhg:D, 5nhg:E, 5nhg:F, 5nhg:G, 5nhg:H, 7psc:A, 7psc:B, 3rnm:A, 3rnm:B, 3rnm:C, 3rnm:D, 1zmc:A, 1zmc:B, 1zmc:C, 1zmc:D, 1zmc:E, 1zmc:F, 1zmc:G, 1zmc:H, 1zmd:A, 1zmd:B, 1zmd:C, 1zmd:D, 1zmd:E, 1zmd:F, 1zmd:G, 1zmd:H, 1zy8:A, 1zy8:B, 1zy8:C, 1zy8:D, 1zy8:E, 1zy8:F, 1zy8:G, 1zy8:H, 1zy8:I, 1zy8:J, 7zyt:A, 7zyt:B
72 2jal:B 444 75 0.0461 0.0495 0.2933 7.0 2cbu:A, 2cbu:B, 2cbv:A, 2cbv:B, 2ces:A, 2ces:B, 2cet:A, 2cet:B, 2j75:A, 2j75:B, 2j77:A, 2j77:B, 2j78:A, 2j78:B, 2j79:A, 2j79:B, 2j7b:A, 2j7b:B, 2j7c:A, 2j7c:B, 2j7d:A, 2j7d:B, 2j7e:A, 2j7e:B, 2j7f:A, 2j7f:B, 2j7g:A, 2j7g:B, 2j7h:A, 2j7h:B, 2jal:A, 5n6s:A, 5n6s:B, 5n6s:C, 5n6s:D, 5n6t:A, 5n6t:B, 1oif:A, 1oif:B, 1oim:A, 1oim:B, 1oin:A, 1oin:B, 5oss:B, 1uz1:A, 1uz1:B, 2vrj:A, 2vrj:B, 1w3j:A, 1w3j:B, 2wbg:A, 2wbg:B, 2wbg:C, 2wbg:D, 2wc3:A, 2wc3:B, 2wc3:C, 2wc3:D, 2wc4:A, 2wc4:B, 2wc4:C, 2wc4:D
73 4j56:A 504 27 0.0273 0.0258 0.4815 8.0 4b1b:A, 4b1b:B, 4j56:B, 4j56:C, 4j56:D, 4j57:A, 4j57:B
74 5i39:A 383 38 0.0314 0.0392 0.3947 8.7
75 6tlk:A 289 44 0.0356 0.0588 0.3864 8.8 1lua:A, 1lua:B, 1lua:C, 6tge:A, 6tge:C, 6tge:B, 6tge:D, 6tge:F, 6tge:E, 6tge:G, 6tge:I, 6tge:H, 6tge:J, 6tge:L, 6tge:K, 6tge:M, 6tge:O, 6tge:N, 6tge:P, 6tge:R, 6tge:Q, 6tge:S, 6tge:U, 6tge:T, 6tge:V, 6tge:X, 6tge:W, 6tlk:B, 6tlk:C, 6tlk:D, 6tlk:E, 6tlk:F, 6tm3:A
76 1f6m:A 320 55 0.0377 0.0563 0.3273 8.9 1cl0:A, 1f6m:B, 1f6m:E, 1f6m:F, 1tde:A, 1tdf:A, 1trb:A
77 6hns:A 443 39 0.0356 0.0384 0.4359 8.9 6hns:B
78 4hln:A 504 63 0.0335 0.0317 0.2540 9.0
79 6cmz:A 462 32 0.0314 0.0325 0.4688 9.3 6cmz:B, 6cmz:C, 6cmz:D
80 4cpd:A 346 40 0.0356 0.0491 0.4250 9.4 4cpd:B, 4cpd:C, 4cpd:D
81 7jyp:A 305 45 0.0294 0.0459 0.3111 9.8
82 4x4j:A 482 32 0.0294 0.0290 0.4375 9.9 4x4j:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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