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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TLVPDLTATDLARHRWLTDNSWTRPTWTVAELEAAKAGRTISVVLPALNEEETVGGVVETIRPLLGGLVDELIVLDSGST
DDTEIRAMAAGARVISREVALPEVAPQPGKGEVLWRSLAATTGDIIVFIDSDLIDPDPMFVPKLVGPLLLSEGVHLVKGF
YRRPLGGRVTELVARPLLAALRPELTCVLQPLGGEYAGTRELLMSVPFAPGYGVEIGLLVDTYDRLGLDAIAQVNLGVRA
HRNRPLTDLAAMSRQVIATLFSRCGVPDSGVGLTQFFSPRTSEVSLVDRPPMNTLRGKLAAAL

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pe4:A 310 309 0.9967 0.9742 0.9773 0.0 7p8g:A, 7pd5:A, 7pdo:A, 7pho:A, 7pho:B, 7qi9:A, 7qi9:B, 7qib:A, 7qib:B, 7qoq:A, 7qoq:B
2 3ckq:A 302 290 0.7525 0.7550 0.7862 2.95e-161 3ckn:A, 3cko:A, 3ckv:A
3 4dec:A 284 283 0.7195 0.7676 0.7703 1.78e-152 4de7:A, 3e25:A, 5jsx:A, 5jt0:A, 5juc:A, 5jud:A, 4y6n:A, 4y6u:A, 4y7f:A, 4y7g:A, 4y9x:A
4 3f1y:A 318 308 0.3696 0.3522 0.3636 3.23e-56 3f1y:C, 3kia:A, 3kia:C, 3o3p:A, 3o3p:B
5 5mlz:A 355 193 0.1683 0.1437 0.2642 4.46e-08 5mm0:A, 5mm1:A
6 7msk:A 421 116 0.1023 0.0736 0.2672 0.001 7msk:B
7 5eke:C 307 115 0.0990 0.0977 0.2609 0.005 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
8 2bo6:A 380 144 0.1452 0.1158 0.3056 0.018 2bo6:B, 2bo7:A, 2bo7:B, 2bo7:C, 2bo7:D, 2bo7:E, 2bo7:F, 2bo7:G, 2bo7:H, 2bo7:I, 2bo7:J, 2bo8:A, 2bo8:B, 2bo8:C, 2bo8:D, 2bo8:E, 2bo8:F, 2bo8:G, 2bo8:H, 2bo8:I, 2bo8:J, 2y4k:A, 2y4k:B, 2y4l:A, 2y4l:B, 2y4m:A, 2y4m:B
9 6yv8:A 346 119 0.1089 0.0954 0.2773 0.034 6yv8:B, 6yv9:A, 6yv9:B
10 2zu8:A 373 130 0.1155 0.0938 0.2692 0.11 2zu8:B, 2zu9:B, 2zu9:A
11 4fix:A 629 137 0.1254 0.0604 0.2774 1.4 4fix:B, 4fiy:A, 4fiy:B
12 3ajx:A 207 88 0.0924 0.1353 0.3182 1.4 3ajx:B, 3ajx:C, 3ajx:D
13 2yjp:A 247 59 0.0561 0.0688 0.2881 1.5 2yjp:B, 2yjp:C
14 6b1t:O 180 51 0.0627 0.1056 0.3725 1.9
15 7s78:U 165 51 0.0627 0.1152 0.3725 2.2
16 3bdz:A 397 117 0.0990 0.0756 0.2564 3.0 3bdz:B, 3be0:A, 3be0:B, 4fb2:A, 4fb2:B, 4fb2:C, 4fb2:D, 4fmx:A, 4fmx:B, 4fyz:A, 4fyz:B, 4l6g:A, 4l6g:B, 4l77:A, 4l77:B, 4lht:A, 4lht:B, 1t2b:A, 1t2b:B
17 7tau:V 188 61 0.0693 0.1117 0.3443 5.4
18 1qz9:A 404 103 0.0825 0.0619 0.2427 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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