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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TLSIPPSIQCQTEAACRLITRVTGDTLRAIHLYGSAVAGGLKPNSDIDLLVTICQPLTEAQRATLMQELLALSSPPGASA
EKRALQVTVVLYSQLVPWCFPPSREMQFGEWLREDICQGIYEPAQQDWDMVLLITQILETSIPLKGERAERLFTPAPAAQ
LLKALRYPLDLWQSTADVQGDEYHIVLTLARIWYTLSTGRFTSKDAAADWLLPQLPEDYAATLRAAQREYLGLEQQDWHI
LLPAVVRFVDFAKAHIPTQFTHHH

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lpa:A 267 264 0.9962 0.9850 0.9962 0.0 6fzb:A, 6fzb:B, 5g4a:A, 5g4a:B, 5lpa:B, 5luh:A, 5luh:B
2 7uy4:A 258 249 0.4205 0.4302 0.4458 1.71e-69 7uy4:B
3 6xz0:A 250 230 0.2538 0.2680 0.2913 8.11e-33 6xxq:A, 6xxq:B
4 4h44:C 289 79 0.0833 0.0761 0.2785 0.11 4ogq:C, 1tu2:B, 2zt9:C
5 6tmf:R 151 48 0.0644 0.1126 0.3542 0.83 6skf:Aq, 6skg:Aq, 6th6:Aq
6 7bxo:E 125 43 0.0644 0.1360 0.3953 1.7 7aer:A, 7bxo:A, 6m6v:A
7 2e74:C 288 78 0.0795 0.0729 0.2692 1.8 2d2c:C, 2d2c:P, 2e75:C, 2e76:C, 4h0l:C, 4h13:C, 4i7z:C, 4pv1:C, 1vf5:C, 1vf5:P
8 3c66:A 529 46 0.0644 0.0321 0.3696 5.7 3c66:B, 1fa0:A, 1fa0:B, 2q66:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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