Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLLFQVLLAALVIVSFLMIVAVPVAYASPQNWSQSKPLIFIGSGLWAVLVILVGVFNYLV

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wql:ZD 60 60 1.0000 1.0000 1.0000 4.40e-35 8wql:ZE, 8wql:Z1
2 7n8o:Z 60 60 0.6333 0.6333 0.6333 8.98e-24 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
3 3a0b:Z 62 60 0.6667 0.6452 0.6667 9.14e-24 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
4 7oui:Z 62 60 0.4500 0.4355 0.4500 3.14e-13 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
5 7y5e:z6 60 54 0.4333 0.4333 0.4815 6.52e-13 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
6 7pi5:Z 61 57 0.4500 0.4426 0.4737 1.50e-12 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
7 8xlp:z 61 58 0.4167 0.4098 0.4310 1.01e-11 8xlp:Z
8 8wb4:z 61 58 0.4167 0.4098 0.4310 9.04e-11 8wb4:Z, 8xr6:Z, 8xr6:z
9 4yuu:Z2 59 57 0.3833 0.3898 0.4035 2.55e-09 4yuu:z2
10 7ymi:Z 59 49 0.3333 0.3390 0.4082 2.40e-06 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
11 8iwh:Z 61 35 0.2500 0.2459 0.4286 0.005 8j5k:Z, 8j5k:z, 6jlu:Z, 6jlu:z
12 6j3y:Z 59 34 0.2333 0.2373 0.4118 0.015 6j3y:z, 6j3z:Z, 6j3z:z, 6j40:Z, 6j40:z, 7vd5:Z, 7vd5:z
13 8c9e:A 921 38 0.1833 0.0119 0.2895 2.2 8c9f:A, 8c9g:A, 8c9g:B
14 1ffy:A 917 23 0.1167 0.0076 0.3043 2.8 1qu2:A, 1qu3:A
15 6hns:A 443 19 0.1500 0.0203 0.4737 2.8 6hns:B
16 6f34:A 458 26 0.1833 0.0240 0.4231 6.7 5oqt:A
17 6yu6:B 446 53 0.2833 0.0381 0.3208 7.6 4us3:A, 4us4:A, 6yu2:A, 6yu2:B, 6yu3:A, 6yu4:A, 6yu5:A, 6yu5:B, 6yu6:A, 6yu7:A
18 8wnf:A 918 33 0.1167 0.0076 0.2121 7.7 8wng:A, 8wni:A, 8wnj:A, 8wo2:A, 8wo3:A
19 5zru:A 576 18 0.1833 0.0191 0.6111 8.5 5zru:C
20 6sga:F5 480 20 0.1833 0.0229 0.5500 9.6
21 7pua:F5 620 20 0.1833 0.0177 0.5500 9.7

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218