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BioLiP
>protein
TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC
TNYKGEASDYATLDVT

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6h4l:A 96 96 1.0000 1.0000 1.0000 7.04e-70
2 5oyj:C 223 63 0.2083 0.0897 0.3175 5.90e-04
3 5jdj:B 91 75 0.2500 0.2637 0.3200 8.32e-04 5jdj:E, 5jdj:I, 5jdj:L, 4qeg:A
4 1rpq:D 167 90 0.2604 0.1497 0.2778 0.002 1rpq:A, 1rpq:B, 1rpq:C
5 7ok5:A 582 95 0.2812 0.0464 0.2842 0.002 7ok5:B
6 7ok5:A 582 53 0.1771 0.0292 0.3208 0.063 7ok5:B
7 6fey:B 207 81 0.2292 0.1063 0.2716 0.005 6fey:A
8 6iaa:A 815 64 0.2188 0.0258 0.3281 0.010 6iaa:B
9 6iaa:A 815 101 0.2917 0.0344 0.2772 0.011 6iaa:B
10 6iaa:A 815 71 0.2188 0.0258 0.2958 0.53 6iaa:B
11 1djs:A 206 88 0.2292 0.1068 0.2500 0.012 3cu1:C, 3cu1:A, 1e0o:B
12 5k6w:A 475 65 0.2083 0.0421 0.3077 0.024 5k6v:A, 5k6w:B
13 2iep:A 187 91 0.2500 0.1283 0.2637 0.035 2iep:B
14 2iep:A 187 88 0.2396 0.1230 0.2614 0.099 2iep:B
15 7ysu:C 211 85 0.2396 0.1090 0.2706 0.057 7ysu:E
16 7ysh:D 213 88 0.1979 0.0892 0.2159 0.063 1fq9:C, 1fq9:D, 7ysh:E
17 7ysh:D 213 106 0.2708 0.1221 0.2453 3.8 1fq9:C, 1fq9:D, 7ysh:E
18 8edi:A 200 54 0.1875 0.0900 0.3333 0.17 8edi:B
19 5xnp:A 361 90 0.2292 0.0609 0.2444 0.27 5xnp:B, 5xnq:A
20 7ysw:C 213 92 0.2188 0.0986 0.2283 0.30 7ysw:E
21 4x8x:B 393 69 0.2292 0.0560 0.3188 0.59 4x8x:A, 4x9f:A
22 1aoz:A 552 41 0.1875 0.0326 0.4390 0.60 1aoz:B, 1aso:A, 1aso:B, 1asp:A, 1asp:B, 1asq:A, 1asq:B
23 2vra:A 202 74 0.1667 0.0792 0.2162 0.63 2vra:B
24 2yd1:A 196 97 0.2396 0.1173 0.2371 0.79
25 1uf2:A 967 68 0.2083 0.0207 0.2941 0.87
26 8wnf:A 918 76 0.2292 0.0240 0.2895 1.5 8wng:A, 8wni:A, 8wnj:A, 8wo2:A, 8wo3:A
27 6h4f:B 318 48 0.1771 0.0535 0.3542 3.0 6h1j:B, 6h21:A, 6h21:B, 6h21:C, 6h2n:A, 6h2n:B, 6h2n:C, 6h4f:C, 6h4f:F, 6h4f:O, 6h4f:P, 6h4f:E, 6h4f:G, 6h4f:Q, 6h4f:A, 6h4f:D, 6h4f:H, 6h4f:I, 6h4m:B, 6h4m:C, 6h4m:F, 6h4m:O, 6h4m:P, 6h4m:E, 6h4m:G, 6h4m:Q, 6h4m:A, 6h4m:D, 6h4m:H, 6h4m:I, 6hnq:B, 6hnq:C, 6hnq:F, 6hnq:O, 6hnq:P, 6hnq:E, 6hnq:G, 6hnq:Q, 6hnq:A, 6hnq:D, 6hnq:H, 6hnq:I
28 5k6x:A 374 66 0.1875 0.0481 0.2727 3.4 5k6y:A
29 5k3j:A 662 30 0.1042 0.0151 0.3333 4.6 5k3j:B
30 8a3w:SM 102 68 0.2188 0.2059 0.3088 7.3 8a98:SM, 6az1:M, 8ovj:SM, 8rxh:SM, 8rxx:SM, 5t2a:AQ
31 6kc4:A 101 22 0.0938 0.0891 0.4091 7.3 6kc4:C, 6kc4:E, 6kc4:G, 6kc4:I, 6kc4:K
32 8d40:B 427 37 0.0938 0.0211 0.2432 7.5 8d40:A
33 8jw0:f 185 19 0.0729 0.0378 0.3684 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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