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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKVSLVYISLSGNTESFVRRLTDYLLEQHPSLEVEKIHIKDLVKERQPFFEMDNPFIAFLPTYLEGGNGVDNGDVEILTT
DVGDFIAYGQNASKCLGVIGSGNRNFNNQYCLTAKQYSERFGFPVLADFEMRGMLGDIKKVAGIIEELYHIEK

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4n82:B 153 153 1.0000 1.0000 1.0000 8.83e-113 4n82:A
2 7mmp:E 139 150 0.3072 0.3381 0.3133 7.59e-13 6ebq:A, 6ebq:B, 7mmp:G, 7mmp:F, 7mmp:H, 7mmq:E, 7mmq:F, 7mmq:H, 7mmr:E, 7mmr:G, 7mmr:F, 7mmr:H, 7mms:E, 7mms:G, 7mms:F, 7mms:H
3 3n3a:C 131 147 0.2941 0.3435 0.3061 2.99e-10 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
4 7mmq:G 124 147 0.2745 0.3387 0.2857 4.83e-10
5 4bmo:B 118 136 0.2484 0.3220 0.2794 8.91e-07 4bmp:B, 2x2o:A, 2x2p:A, 2xod:A, 2xoe:A, 7z3d:B, 7z3e:B
6 1rlj:A 135 142 0.2353 0.2667 0.2535 0.002
7 5vhe:A 871 81 0.1569 0.0276 0.2963 0.21 6up3:A, 6up4:A, 5vhc:D, 5vhd:D
8 3c01:E 88 25 0.0588 0.1023 0.3600 0.64 3c01:F, 3c01:G, 3c01:H
9 2q5l:A 538 88 0.1699 0.0483 0.2955 1.9 2nxw:A, 2nxw:B, 2q5j:A, 2q5j:B, 2q5l:B, 2q5o:A, 2q5o:B, 2q5q:A, 2q5q:B
10 5lkd:A 352 36 0.0784 0.0341 0.3333 2.2 5lkd:B
11 6qsi:A 525 53 0.1046 0.0305 0.3019 2.4 6qsi:B
12 3cp5:A 116 61 0.1176 0.1552 0.2951 6.0 6cuk:A, 6cun:A
13 6fsg:A 147 63 0.1046 0.1088 0.2540 6.9 6fsi:A, 6ft1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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