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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKVALFSGGDLTYFTRDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDTDTELALK
TIFDCFGRVEIIVFGAFGGRIDHMLSNIFLPSDPDLAPFMRCFKLRDEQNLVEFFPAGQHQIEQATDMVYISFMAANGAH
LSIQDAKYELTEENYFQKKIYSSNEFKDKPICFSVASGYVVVIQTKD

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ihk:B 208 207 1.0000 0.9952 1.0000 6.98e-154 3ihk:A, 3ihk:C
2 3mel:C 214 212 0.3913 0.3785 0.3821 1.68e-50 3mel:A, 3mel:B, 3mel:D
3 3lm8:A 214 204 0.3188 0.3084 0.3235 3.20e-22 3lm8:B, 3lm8:C, 3lm8:D
4 3s4y:A 224 171 0.1787 0.1652 0.2164 0.11 3s4y:B
5 2f17:A 255 114 0.1256 0.1020 0.2281 0.86 2f17:B, 1ig3:A, 1ig3:B
6 4pty:A 174 101 0.1353 0.1609 0.2772 1.5 6dqo:A, 4pty:B, 4ptz:C, 4ptz:A, 4ptz:B, 4ptz:D, 4pu0:C, 4pu0:A, 4pu0:D
7 4eyg:B 364 47 0.0870 0.0495 0.3830 1.9 4eyg:A
8 1huv:A 349 74 0.0725 0.0430 0.2027 2.5
9 3vcz:B 127 47 0.0676 0.1102 0.2979 2.9
10 7vtp:A 795 59 0.0870 0.0226 0.3051 3.1 7alv:A, 7vtp:B, 7vtp:C, 7vtp:D, 7vtp:E, 7vtp:F, 8wsm:A
11 8ej4:A 850 59 0.0870 0.0212 0.3051 3.1 8ej4:B, 8ej4:C, 8ej4:D, 8ej4:E, 8ej4:F, 8ej4:G, 8ej4:H, 8ej4:I, 8ej4:J, 8etr:A, 8ri2:A, 8swk:A, 8swk:B, 8swk:C, 8swk:D, 8swk:E, 8swk:F, 8sxn:C, 8sxn:D, 7zgu:A, 7zgu:B, 7zgu:C, 7zgu:D, 7zgu:E, 7zgu:F
12 7pzc:A 1010 59 0.0870 0.0178 0.3051 3.2 7pzc:B, 7pzc:C, 7pzc:D, 7pzc:E, 7pzc:F, 7pzc:G, 7pzc:H, 7pzc:I, 7pzc:J
13 6bfg:A 373 74 0.0725 0.0402 0.2027 3.4 2a7n:A, 2a7p:A, 2a85:A, 6bfg:B, 3giy:A, 1p4c:A, 1p5b:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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