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BioLiP
>protein
TKSFTLPILTISEMTNSRFPIPIEQLYTAPNETNVVQCQNGRCTLDGELQGTTQLLSSAICSYRGRTLANNDSWDQNLLQ
LSYPNGASYDPTDEVPAPLGTQDFSGILYGVLTQDNVTEGTGEAKNAKGIYISTTSGKFTPKIGSIGLHSITGDVHHNQQ
SRFTPVGIAVNENTPFKQWVLPHYSGSLALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLHGQDAFIDCLLPQEWVNHFY
QEAAPSQTDVALIRFVNPDTGRTLFEAKLHRSGFITVSHTGNYPLVIPPNGHFRFDSWVNQFYSLAPM

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zvc:B 311 309 0.9188 0.9100 0.9159 0.0 6jyn:A, 6jyn:B, 6jyn:C, 6jyn:D, 6jys:A, 6jys:B, 6jys:C, 6jys:D, 5zvc:A
2 4rlz:B 307 309 0.7240 0.7264 0.7217 1.26e-166 4rlz:A, 4rm0:A, 4rm0:B
3 5lkg:A 308 309 0.6266 0.6266 0.6246 3.42e-142 5lkc:A, 5lkc:B, 5lkg:B, 5lkk:A, 5lkk:B, 5zv5:A, 5zv5:B, 5zv7:A, 5zv7:B
4 3r6k:A 301 312 0.6299 0.6445 0.6218 1.54e-133
5 6gw4:A 307 311 0.6104 0.6124 0.6045 6.91e-130
6 6is5:B 304 311 0.5909 0.5987 0.5852 3.58e-129 6is5:A, 6is5:C, 6is5:D
7 3pa1:A 315 320 0.6136 0.6000 0.5906 3.47e-128 5bsx:A, 5bsy:A, 6gw1:A, 6gw1:B, 6gw2:A, 6gw2:B, 6gy9:A, 6gy9:B, 5hza:A, 5hza:B, 5hzb:B, 5hzb:A, 3ony:A, 3ony:B, 3ony:C, 3pa1:B, 3pa2:A, 3pa2:B, 3q38:A, 3q39:A, 3q39:B, 3q3a:B, 3q3a:A, 3ry8:A, 8y6c:B, 8y6c:A, 8y6d:B, 8y6d:A, 4z4r:A, 4z4r:B, 4z4s:A, 4z4s:B, 4z4t:A, 4z4t:B, 4z4u:A, 4z4u:B, 4z4v:A, 4z4v:B, 4z4w:A, 4z4w:B, 4z4y:A, 4z4z:A, 4z4z:B
8 7yqg:B 301 307 0.5812 0.5947 0.5831 3.92e-127 7yqg:A
9 6gvz:A 305 310 0.6104 0.6164 0.6065 1.18e-124 6gw0:A
10 5iyp:B 306 313 0.5974 0.6013 0.5879 4.99e-122 5iyp:A, 5iyq:A, 5iyq:B, 5iyr:A, 5iyr:B, 5iyw:A, 5iyw:B
11 3sej:C 311 316 0.5942 0.5884 0.5791 7.29e-122 6h9v:A, 2obs:A, 2obt:A, 4ops:B, 4ops:A, 3sej:B, 3sej:E, 3sej:A, 3sej:D, 3sej:F, 3sej:G, 3sej:J, 3sjp:A, 3sld:A, 3sld:C, 3sld:B, 3sld:E, 3sld:D, 3sld:F, 3sld:G, 3sld:J, 3sln:A, 3sln:C, 3sln:B, 3sln:E, 3sln:D, 3sln:F, 3sln:G, 3sln:J, 4x05:D
12 6otf:B 521 313 0.5714 0.3378 0.5623 2.48e-121 6otf:A, 6otf:C, 6ouc:A
13 5j35:A 309 314 0.5779 0.5761 0.5669 3.37e-119 6h9v:B, 5j35:B, 5j3o:A, 5j3o:B, 5lfe:A, 5lfe:B, 4op7:A, 4op7:B, 4opo:A, 4opo:B, 8vrv:A, 4wze:A, 4wze:B, 4wzk:A, 4wzk:B, 4wzl:A, 4wzl:B, 4wzt:A, 4wzt:B, 4x05:A, 4x05:B, 4x05:C, 4x06:A, 4x06:B, 4x07:A, 4x07:B, 4x0c:A, 4x0c:B, 8y5v:A
14 3pun:A 302 308 0.5260 0.5364 0.5260 5.93e-113 3pun:B, 3pvd:A, 3pvd:B
15 7vs8:A 310 313 0.3669 0.3645 0.3610 7.94e-52 7vs8:B, 7vs9:A, 7vs9:B
16 4rdl:A 297 307 0.3409 0.3535 0.3420 1.97e-49 4rdk:A, 4rdk:B, 4rdl:B
17 6h70:A 290 311 0.3636 0.3862 0.3601 2.19e-49 6h70:B, 6h72:A, 6h72:B, 5kw9:A, 5n7m:A, 5n7m:B, 2zl5:A, 2zl5:B, 2zl6:B, 2zl6:A, 2zl7:A, 2zl7:B
18 7eqt:A 304 312 0.3506 0.3553 0.3462 4.92e-48 7eqw:A
19 3asq:A 311 318 0.3539 0.3505 0.3428 4.37e-47 3asq:B, 3asr:A, 3asr:B, 3ass:A, 3ass:B, 3ast:A, 3ast:B
20 7er1:A 303 311 0.3474 0.3531 0.3441 2.38e-46
21 5e6t:B 284 308 0.3571 0.3873 0.3571 3.71e-46
22 4p1v:C 291 307 0.3442 0.3643 0.3453 1.11e-43 4p1v:A, 4p1v:B, 4p1v:D, 4p25:A, 4p25:B, 4p25:C, 4p25:D, 4p2n:B, 4p2n:A, 4p2n:C, 4p2n:D, 4p3i:A, 4p3i:B, 4p3i:C, 4p3i:D
23 8uux:B 515 311 0.3182 0.1903 0.3151 2.56e-33 6c6q:A, 6c6q:B, 6e47:A, 6e47:B, 6e48:A, 6e48:B, 6h6l:A, 6h6l:B, 6h6l:C, 6h6l:D, 6h6m:A, 6h6m:B, 6h6m:C, 6h6m:D, 6p4j:A, 6p4j:B, 6p4j:C, 6p4k:A, 6p4k:B, 6p4k:C, 8uux:A, 8uv3:A, 8uv3:C, 6xw6:A, 6xw6:B, 6xw7:A, 6xw7:B, 6xw7:E, 6xw7:F
24 7t4p:B 241 116 0.1006 0.1286 0.2672 0.78 7t4p:F, 7t4p:J
25 7c98:A 309 93 0.0779 0.0777 0.2581 2.0 7c98:B, 7c98:C, 7c99:A, 7c99:B, 7c99:C, 7c9c:A, 7c9c:B, 7c9c:C, 7cgy:A, 7cgy:B, 7cgy:C, 8qqe:B, 8qqe:A, 8r2g:C, 8r2g:G, 8r2g:H, 8r2g:A, 8r2g:D, 8r2g:E, 8r2g:B
26 6fyx:I 188 44 0.0584 0.0957 0.4091 2.1 6fyy:I, 6gsm:I, 6gsn:I, 8i7j:I, 5it7:I, 5it9:I, 3j80:I, 3j81:I, 3jam:I, 3jap:I, 8rw1:I, 8s8d:I, 8s8e:I, 8s8f:I, 8s8g:I, 8s8h:I, 8s8i:I, 8s8j:I, 6uz7:I
27 8jiw:BI 186 33 0.0357 0.0591 0.3333 5.3 8ip8:ca, 8ip9:ca, 8ipa:ca, 8ipb:ca, 8r6f:I
28 5wyj:SJ 170 96 0.0812 0.1471 0.2604 6.9 7d4i:SJ, 7d5t:SJ, 7d63:SJ, 6ke6:SJ, 6lqp:SJ, 6lqq:SJ, 6lqr:SJ, 6lqs:SJ, 6lqt:SJ, 6lqu:SJ, 6lqv:SJ, 5wyk:SJ
29 3qp5:A 251 115 0.0649 0.0797 0.1739 8.0 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
30 1lvg:A 190 34 0.0357 0.0579 0.3235 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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